Ccdc63 (coiled-coil domain containing 63) - Rat Genome Database

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Gene: Ccdc63 (coiled-coil domain containing 63) Mus musculus
Analyze
Symbol: Ccdc63
Name: coiled-coil domain containing 63
RGD ID: 1614047
MGI Page MGI
Description: Involved in spermatid development. Predicted to be active in axoneme. Orthologous to human CCDC63 (coiled-coil domain containing 63).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4921511C16Rik; coiled-coil domain-containing protein 63
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,246,115 - 122,276,143 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,246,103 - 122,278,886 (-)EnsemblGRCm39 Ensembl
GRCm385122,108,052 - 122,138,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,108,040 - 122,140,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,558,065 - 122,588,071 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,368,673 - 122,398,679 (-)NCBIMGSCv36mm8
Celera5119,199,057 - 119,227,555 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
melanoma  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:26501274  
PMID:28378742   PMID:32325033  


Genomics

Comparative Map Data
Ccdc63
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,246,115 - 122,276,143 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,246,103 - 122,278,886 (-)EnsemblGRCm39 Ensembl
GRCm385122,108,052 - 122,138,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,108,040 - 122,140,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,558,065 - 122,588,071 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,368,673 - 122,398,679 (-)NCBIMGSCv36mm8
Celera5119,199,057 - 119,227,555 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.17NCBI
CCDC63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812110,844,486 - 110,907,535 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12110,846,769 - 110,907,535 (+)EnsemblGRCh38hg38GRCh38
GRCh3712111,284,791 - 111,345,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612109,769,194 - 109,829,721 (+)NCBINCBI36Build 36hg18NCBI36
Celera12110,911,504 - 110,972,027 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12108,301,376 - 108,334,741 (+)NCBIHuRef
HuRef12108,335,338 - 108,361,810 (+)NCBIHuRef
CHM1_112111,252,521 - 111,313,047 (+)NCBICHM1_1
T2T-CHM13v2.012110,822,299 - 110,886,718 (+)NCBIT2T-CHM13v2.0
Ccdc63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,085,146 - 40,113,820 (+)NCBIGRCr8
mRatBN7.21234,424,388 - 34,453,080 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,424,344 - 34,453,085 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,596,901 - 35,625,505 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,208,114 - 36,236,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,260,594 - 35,289,198 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,905,120 - 39,950,719 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,913,628 - 39,950,641 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,820,509 - 41,828,135 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01241,785,149 - 41,799,002 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,622,123 - 35,652,555 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1236,095,026 - 36,120,962 (+)NCBICelera
Cytogenetic Map12q16NCBI
Ccdc63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,673,285 - 7,707,011 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,673,495 - 7,707,065 (+)NCBIChiLan1.0ChiLan1.0
CCDC63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,908,704 - 118,973,321 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,905,108 - 118,969,725 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012108,417,758 - 108,477,163 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112111,810,462 - 111,870,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12111,816,429 - 111,870,006 (+)Ensemblpanpan1.1panPan2
CCDC63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,587,306 - 8,623,558 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,587,784 - 8,652,946 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,750,471 - 8,786,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,846,969 - 8,883,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,850,690 - 8,883,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1268,803,726 - 8,839,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,866,472 - 8,901,892 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,818,758 - 8,855,259 (+)NCBIUU_Cfam_GSD_1.0
Ccdc63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,734,773 - 155,766,937 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365583,716,920 - 3,744,633 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1432,140,517 - 32,203,935 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11432,140,323 - 32,300,930 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21434,055,103 - 34,112,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111106,089,480 - 106,151,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11106,096,208 - 106,151,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037138,939,315 - 139,026,988 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,115,159 - 21,145,188 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,114,125 - 21,149,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1153
Count of miRNA genes:591
Interacting mature miRNAs:740
Transcripts:ENSMUST00000058960, ENSMUST00000128101, ENSMUST00000132701, ENSMUST00000146235, ENSMUST00000152389
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001384201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_183307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV276792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV278877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV279232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV280582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV281915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB614558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000058960   ⟹   ENSMUSP00000050582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,246,103 - 122,276,125 (-)Ensembl
GRCm38.p6 Ensembl5122,108,040 - 122,138,062 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128101   ⟹   ENSMUSP00000114804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,246,118 - 122,270,066 (-)Ensembl
GRCm38.p6 Ensembl5122,125,032 - 122,132,003 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132701   ⟹   ENSMUSP00000114311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,246,103 - 122,270,066 (-)Ensembl
GRCm38.p6 Ensembl5122,129,898 - 122,132,003 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,272,500 - 122,277,020 (-)Ensembl
GRCm38.p6 Ensembl5122,134,437 - 122,138,957 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152389   ⟹   ENSMUSP00000114143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,246,148 - 122,272,878 (-)Ensembl
GRCm38.p6 Ensembl5122,108,085 - 122,134,815 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,274,182 - 122,278,886 (-)Ensembl
GRCm38.p6 Ensembl5122,136,119 - 122,140,823 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,246,133 - 122,249,176 (-)Ensembl
GRCm38.p6 Ensembl5122,108,070 - 122,111,113 (-)Ensembl
RefSeq Acc Id: NM_001289809   ⟹   NP_001276738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,115 - 122,272,956 (-)NCBI
GRCm385122,108,052 - 122,134,893 (-)NCBI
Celera5119,199,053 - 119,227,555 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001289811   ⟹   NP_001276740
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,115 - 122,272,956 (-)NCBI
GRCm385122,108,052 - 122,134,893 (-)NCBI
Celera5119,199,053 - 119,227,555 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384197   ⟹   NP_001371126
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,028 (-)NCBI
GRCm385122,108,055 - 122,131,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384198   ⟹   NP_001371127
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,028 (-)NCBI
GRCm385122,108,055 - 122,131,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384199   ⟹   NP_001371128
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,028 (-)NCBI
GRCm385122,108,055 - 122,131,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384200   ⟹   NP_001371129
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,028 (-)NCBI
GRCm385122,108,055 - 122,131,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001384201   ⟹   NP_001371130
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,028 (-)NCBI
GRCm385122,108,055 - 122,131,965 (-)NCBI
Sequence:
RefSeq Acc Id: NM_183307   ⟹   NP_899130
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,115 - 122,276,125 (-)NCBI
GRCm385122,108,052 - 122,138,062 (-)NCBI
MGSCv375122,558,065 - 122,588,071 (-)RGD
Celera5119,199,053 - 119,227,555 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530389   ⟹   XP_006530452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,251,203 - 122,270,092 (-)NCBI
GRCm385122,113,140 - 122,132,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248222   ⟹   XP_011246524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,091 (-)NCBI
GRCm385122,108,055 - 122,132,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248223   ⟹   XP_011246525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,269,121 (-)NCBI
GRCm385122,108,055 - 122,131,056 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248224   ⟹   XP_011246526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,276,143 (-)NCBI
GRCm385122,108,055 - 122,138,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248225   ⟹   XP_011246527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,399 (-)NCBI
GRCm385122,108,055 - 122,132,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248227   ⟹   XP_011246529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,091 (-)NCBI
GRCm385122,108,055 - 122,132,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248228   ⟹   XP_011246530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,276,142 (-)NCBI
GRCm385122,108,055 - 122,138,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248229   ⟹   XP_011246531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,246,118 - 122,270,091 (-)NCBI
GRCm385122,108,055 - 122,132,028 (-)NCBI
Sequence:
RefSeq Acc Id: NP_899130   ⟸   NM_183307
- Peptide Label: isoform 2
- UniProtKB: Q0VF78 (UniProtKB/Swiss-Prot),   Q8CDV6 (UniProtKB/Swiss-Prot),   A0A0R4J0M8 (UniProtKB/TrEMBL),   D3YVN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530452   ⟸   XM_006530389
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001276738   ⟸   NM_001289809
- Peptide Label: isoform 1
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276740   ⟸   NM_001289811
- Peptide Label: isoform 3
- UniProtKB: Q0VF78 (UniProtKB/Swiss-Prot),   Q8CDV6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246530   ⟸   XM_011248228
- Peptide Label: isoform X2
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246526   ⟸   XM_011248224
- Peptide Label: isoform X1
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246527   ⟸   XM_011248225
- Peptide Label: isoform X1
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246524   ⟸   XM_011248222
- Peptide Label: isoform X1
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246529   ⟸   XM_011248227
- Peptide Label: isoform X2
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246531   ⟸   XM_011248229
- Peptide Label: isoform X3
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246525   ⟸   XM_011248223
- Peptide Label: isoform X1
- UniProtKB: A7YTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001371130   ⟸   NM_001384201
- Peptide Label: isoform 4
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot),   D3YUZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001371129   ⟸   NM_001384200
- Peptide Label: isoform 6
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001371128   ⟸   NM_001384199
- Peptide Label: isoform 2
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot),   A0A0R4J0M8 (UniProtKB/TrEMBL),   D3YVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001371127   ⟸   NM_001384198
- Peptide Label: isoform 5
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001371126   ⟸   NM_001384197
- Peptide Label: isoform 4
- UniProtKB: Q8CDV6 (UniProtKB/Swiss-Prot),   Q0VF78 (UniProtKB/Swiss-Prot),   D3YUZ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000114311   ⟸   ENSMUST00000132701
Ensembl Acc Id: ENSMUSP00000114143   ⟸   ENSMUST00000152389
Ensembl Acc Id: ENSMUSP00000114804   ⟸   ENSMUST00000128101
Ensembl Acc Id: ENSMUSP00000050582   ⟸   ENSMUST00000058960
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CDV6-F1-model_v2 AlphaFold Q8CDV6 1-558 view protein structure

Promoters
RGD ID:6887954
Promoter ID:EPDNEW_M7428
Type:initiation region
Name:Ccdc63_1
Description:Mus musculus coiled-coil domain containing 63 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,131,965 - 122,132,025EPDNEW
RGD ID:6837222
Promoter ID:MM_KWN:43927
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:OTTMUST00000060670,   OTTMUST00000060671
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,581,594 - 122,582,094 (-)MPROMDB
RGD ID:6837219
Promoter ID:MM_KWN:43929
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000060668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,588,811 - 122,589,311 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3607777 AgrOrtholog
Ensembl Genes ENSMUSG00000043036 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058960 ENTREZGENE
  ENSMUST00000058960.14 UniProtKB/TrEMBL
  ENSMUST00000128101 ENTREZGENE
  ENSMUST00000128101.9 UniProtKB/TrEMBL
  ENSMUST00000132701 ENTREZGENE
  ENSMUST00000132701.3 UniProtKB/TrEMBL
  ENSMUST00000152389.8 UniProtKB/TrEMBL
InterPro ODA-DC/CCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ODAD1_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:330188 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:3607777 ENTREZGENE
NCBI Gene 330188 ENTREZGENE
PANTHER PTHR21694:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF6872 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc63 PhenoGen
UniProt A0A0R4J0M8 ENTREZGENE
  A7YTZ6 ENTREZGENE, UniProtKB/TrEMBL
  CCD63_MOUSE UniProtKB/Swiss-Prot
  D3YUZ2 ENTREZGENE, UniProtKB/TrEMBL
  D3YVN4 ENTREZGENE, UniProtKB/TrEMBL
  D6RE42_MOUSE UniProtKB/TrEMBL
  Q0VF78 ENTREZGENE
  Q8CDV6 ENTREZGENE
UniProt Secondary A0A0R4J0M8 UniProtKB/TrEMBL
  Q0VF78 UniProtKB/Swiss-Prot