Ccdc63 (coiled-coil domain containing 63)

Gene: Ccdc63 (coiled-coil domain containing 63) Ictidomys tridecemlineatus

Analyze

Symbol:

Ccdc63

Name:

coiled-coil domain containing 63

RGD ID:

12598945

Description:

INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); melanoma (ortholog); FOUND IN axoneme (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 63

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,734,773 - 155,766,937 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936558	3,716,920 - 3,744,633 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium movement (IEA)

outer dynein arm assembly (IEA)

spermatid development (ISO)

Cellular Component

axoneme (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ccdc63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,734,773 - 155,766,937 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936558	3,716,920 - 3,744,633 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC63
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	110,844,486 - 110,907,535 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	110,846,769 - 110,907,535 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	111,284,791 - 111,345,339 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	109,769,194 - 109,829,721 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	110,911,504 - 110,972,027 (+)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	108,301,376 - 108,334,741 (+)	NCBI		HuRef
HuRef	12	108,335,338 - 108,361,810 (+)	NCBI		HuRef
CHM1_1	12	111,252,521 - 111,313,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	110,822,299 - 110,886,718 (+)	NCBI		T2T-CHM13v2.0

Ccdc63
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,246,115 - 122,276,143 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	122,246,103 - 122,278,886 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	122,108,052 - 122,138,080 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,108,040 - 122,140,823 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	122,558,065 - 122,588,071 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	122,368,673 - 122,398,679 (-)	NCBI		MGSCv36	mm8
Celera	5	119,199,057 - 119,227,555 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.17	NCBI

Ccdc63
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	40,085,146 - 40,113,820 (+)	NCBI		GRCr8
mRatBN7.2	12	34,424,388 - 34,453,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,424,344 - 34,453,085 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	35,596,901 - 35,625,505 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,208,114 - 36,236,718 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,260,594 - 35,289,198 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,905,120 - 39,950,719 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,913,628 - 39,950,641 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	41,820,509 - 41,828,135 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	12	41,785,149 - 41,799,002 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	35,622,123 - 35,652,555 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	36,095,026 - 36,120,962 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Ccdc63
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	7,673,285 - 7,707,011 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	7,673,495 - 7,707,065 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC63
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	118,908,704 - 118,973,321 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	118,905,108 - 118,969,725 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	108,417,758 - 108,477,163 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	111,810,462 - 111,870,065 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	111,816,429 - 111,870,006 (+)	Ensembl	panpan1.1		panPan2

CCDC63
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	8,587,306 - 8,623,558 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	8,587,784 - 8,652,946 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	8,750,471 - 8,786,738 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	8,846,969 - 8,883,275 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	8,850,690 - 8,883,273 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	8,803,726 - 8,839,988 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	8,866,472 - 8,901,892 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	8,818,758 - 8,855,259 (+)	NCBI		UU_Cfam_GSD_1.0

CCDC63
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	32,140,517 - 32,203,935 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	32,140,323 - 32,300,930 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	34,055,103 - 34,112,953 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC63
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	106,089,480 - 106,151,071 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	106,096,208 - 106,151,012 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	138,939,315 - 139,026,988 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc63
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	21,115,159 - 21,145,188 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	21,114,125 - 21,149,269 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013360432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040289480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013360432 ⟹ XP_013215886

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	155,734,773 - 155,766,937 (-)	NCBI
SpeTri2.0	NW_004936558	3,716,920 - 3,744,633 (+)	NCBI

Sequence:

show sequence

TGCTGAGACAAAGAGGTGTGCTCACTGGGTTTGACCTCCGTGGGTCCAGTGTCTGAGCAGAGGA
AAAGCTCAATTCCTTCAAGATGCCGGTGTTGAAGAAGCACAGGAGAAAAACCTCGGTAACTCCT
CCGGAACTTTCCGAGAAGACCAAGGAGCAGCTGGCGGAGGCCGAGCTTCGGCAGCTGAGGCTGC
AGTTCCGAAAAATGGTGGAAAGTCGCAAGTCCTTCAACTTCCGCAGCCAGCTGAAGCTCTCCAG
CCAGCACAAGGAAATCCAGGCCCTGCAAGCAGAGCAGAATGAGATCACTCTGGTTTTGAGTCTC
CTGAAGTCCTCGAAGAACTTGGATCTGGATCAGAAAAACTACCTTGAGCTGCGTTTCCTGTTGC
AGGCCAAGGAAGACTACGAGGCCATGATTAAGTCCATGAAAGAGTTGCTGGTGGAGCTGGATGA
GAAGATTGTTCAGATGGAAAAAAAAATCTCAAGCCAAAAACAGATCTTCACAAAAATGCAGAAG
GCCAACAACCCACAGAAACTGCAGAAACAGATACACATTTTGGAGAGCCGGCTGAATCGGGTCA
CTGAGCACTTTAATAAGATGCTGACTACCAATGCCAAGCTCCGTCAGGAGATTGAGAACCTGCG
GTTTGAGAAGGCCACTTATGACAACATCTACCAGCAGCTGTGCCAGAGCCTGTTGTCGCAGAAG
AAAACCATGAACTTGGCCATTGAGCAGTCTTCTCAGGCCTATGAGCAGAGCATGCAGGCCATGG
CCCGCATGGCTGCCATGAAGGACCGCCAGCAGAAGGACATCTCTGAGTACAACCTGGAGATCCA
GGAGCTGGAGCGGCTCTACGACCACGAGGCCAAGCTCAAGTCCTTCTACAACCACGAGGGCAAG
CTCAAGTCCTTCCTGCATGTCAAGCTGAAGGACCGCATGGAATTGGAGGAGGACGCGAAAAAGG
AAGAAGCTCTCAAGACAAAAAGGCACAGGAAGAATAGCAAGGGAGAGAGTTTTGAGAGCTACCA
GGTGGCCCACCTCCGGCTGATGAAGCTGGTGGAGGATGGGAACCTGAGCCAGCTCATTGAGGAA
TTCCTGGCCAAGGAGGACAAGAACTTTGCCCGGTTTACTTACATCATGGAGCTCAACAACGACA
TGGAGATGATGAACAAGAAGACCCAGGAGATCCAGGATGAGATCACCCACCTGCGATCCCAGCA
GCAGTCTTCCCACGACGACAGCGGCTCTGTCCTGAAGGAGCTCGAGGAGAAGCTGAGGAAGACC
ACGGAGGAGGCCAACAGGTACGAGGACAAAAACCGCCAGCTCAGAAAAACCCTGGAGCATCTCA
AGACCTCGGTGGGGAATCTGTTCAAGAAGATCAACTGCGACGCCTCCAAGATCCTGGTGCAGTT
GGGGGAGACCGGGAAAGTCACCGACACCAACCTGTCCCAGTATTTCTCCCTCATCGAGAAGAAG
ACCAACGACCTGCTGCTGCTGGAGGCCTACATGCGAATGCAGGAAGTGGACACGGACACCGAGC
CGCCCCCGCCCTTCCTCAACCCTTTCTGGGGCGGCTCTGCCCTCGTGAAGCTCCCAGAACCCCT
CAAGGTCACCCCGCCCGTGCTGGGGACTGACCCCTTCAGCGACAAGATAGAGGACATGGAGCAG
CCCCTGGACCATGGCAGCCTGAGGCAGCTGGTGCTGGACAATTACGCCCAGAAGGAAGTTGGCG
GGTCCACAGCCTCACCCAGCGAAACCCGAGGCCGGCGAGACCAACCAAAAGAATAA

hide sequence

RefSeq Acc Id:

XM_040289478 ⟹ XP_040145412

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	155,734,773 - 155,762,928 (-)	NCBI

RefSeq Acc Id:

XM_040289479 ⟹ XP_040145413

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	155,734,773 - 155,763,884 (-)	NCBI

RefSeq Acc Id:

XM_040289480 ⟹ XP_040145414

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	155,734,773 - 155,765,103 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013215886	(Get FASTA)	NCBI Sequence Viewer
	XP_040145412	(Get FASTA)	NCBI Sequence Viewer
	XP_040145413	(Get FASTA)	NCBI Sequence Viewer
	XP_040145414	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001968.3
GenBank Protein	KAG3279029	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013215886 ⟸ XM_013360432

- UniProtKB:

I3LZZ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVLKKHRRKTSVTPPELSEKTKEQLAEAELRQLRLQFRKMVESRKSFNFRSQLKLSSQHKEIQ
ALQAEQNEITLVLSLLKSSKNLDLDQKNYLELRFLLQAKEDYEAMIKSMKELLVELDEKIVQME
KKISSQKQIFTKMQKANNPQKLQKQIHILESRLNRVTEHFNKMLTTNAKLRQEIENLRFEKATY
DNIYQQLCQSLLSQKKTMNLAIEQSSQAYEQSMQAMARMAAMKDRQQKDISEYNLEIQELERLY
DHEAKLKSFYNHEGKLKSFLHVKLKDRMELEEDAKKEEALKTKRHRKNSKGESFESYQVAHLRL
MKLVEDGNLSQLIEEFLAKEDKNFARFTYIMELNNDMEMMNKKTQEIQDEITHLRSQQQSSHDD
SGSVLKELEEKLRKTTEEANRYEDKNRQLRKTLEHLKTSVGNLFKKINCDASKILVQLGETGKV
TDTNLSQYFSLIEKKTNDLLLLEAYMRMQEVDTDTEPPPPFLNPFWGGSALVKLPEPLKVTPPV
LGTDPFSDKIEDMEQPLDHGSLRQLVLDNYAQKEVGGSTASPSETRGRRDQPKE

hide sequence

RefSeq Acc Id:	XP_040145414 ⟸ XM_040289480
- UniProtKB:	I3LZZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040145413 ⟸ XM_040289479
- UniProtKB:	I3LZZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040145412 ⟸ XM_040289478
- UniProtKB:	I3LZZ0 (UniProtKB/TrEMBL)

Protein Domains

ODAD1 central coiled coil region

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002208	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002208.3	UniProtKB/TrEMBL
InterPro	ODAD1_CC	UniProtKB/TrEMBL
NCBI Gene	Ccdc63	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 63	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DUF6872	UniProtKB/TrEMBL
UniProt	I3LZZ0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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