3425401B19Rik (RIKEN cDNA 3425401B19 gene) - Rat Genome Database

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Gene: 3425401B19Rik (RIKEN cDNA 3425401B19 gene) Mus musculus
Analyze
Symbol: 3425401B19Rik
Name: RIKEN cDNA 3425401B19 gene
RGD ID: 1613941
MGI Page MGI
Description: Involved in positive regulation of calcineurin-NFAT signaling cascade. Located in Z disc. Orthologous to human C10orf71 (chromosome 10 open reading frame 71).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cefip; hypothetical protein LOC100504518; hypothetical protein LOC432836; uncharacterized protein C10orf71 homolog; uncharacterized protein C10orf71-like; uncharacterized protein LOC100504518
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,381,075 - 32,429,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,381,076 - 32,407,250 (-)EnsemblGRCm39 Ensembl
GRCm381432,659,118 - 32,707,825 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,659,119 - 32,685,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,472,308 - 33,498,458 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,472,305 - 33,498,458 (-)NCBIMGSCv36mm8
Celera1428,915,536 - 28,941,706 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
Z disc  (IBA,IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:28717008  


Genomics

Comparative Map Data
3425401B19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,381,075 - 32,429,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,381,076 - 32,407,250 (-)EnsemblGRCm39 Ensembl
GRCm381432,659,118 - 32,707,825 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,659,119 - 32,685,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,472,308 - 33,498,458 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,472,305 - 33,498,458 (-)NCBIMGSCv36mm8
Celera1428,915,536 - 28,941,706 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
C10orf71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,297,050 - 49,327,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,299,170 - 49,327,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371050,507,215 - 50,535,537 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,177,193 - 50,205,538 (+)NCBINCBI36Build 36hg18NCBI36
Build 341050,177,192 - 50,205,538NCBI
Celera1044,093,353 - 44,121,712 (+)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1044,771,705 - 44,800,063 (+)NCBIHuRef
CHM1_11050,789,482 - 50,817,794 (+)NCBICHM1_1
T2T-CHM13v2.01050,145,795 - 50,176,288 (+)NCBIT2T-CHM13v2.0
C16h10orf71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,916,901 - 7,968,280 (-)NCBIGRCr8
mRatBN7.2167,910,597 - 7,961,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,910,433 - 7,961,958 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0168,879,907 - 8,907,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,881,138 - 8,885,797 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01610,846,768 - 10,856,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,167,813 - 8,172,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera167,263,241 - 7,290,797 (+)NCBICelera
Cytogenetic Map16p16NCBI
CUNH10orf71
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556895,279 - 899,835 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955556894,707 - 917,196 (-)NCBIChiLan1.0ChiLan1.0
C8H10orf71
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,565,940 - 61,594,246 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,571,259 - 61,599,565 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01044,916,625 - 44,945,094 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
C28H10orf71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,221,423 - 1,250,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,245,117 - 1,249,388 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,457,002 - 1,485,375 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,397,998 - 1,427,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,400,115 - 1,427,516 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,196,258 - 1,225,770 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,233,558 - 1,261,932 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,365,178 - 1,393,560 (+)NCBIUU_Cfam_GSD_1.0
CUNH10orf71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,755,625 - 79,780,373 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936728959,147 - 963,448 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936728958,481 - 982,624 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H10orf71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,913,142 - 89,917,696 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,892,435 - 89,918,364 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,797,356 - 97,827,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH10orf71
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,483,873 - 42,510,826 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,484,882 - 42,489,189 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660482,244,474 - 2,249,472 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH10orf71
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928614,610 - 618,845 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928614,036 - 636,557 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 3425401B19Rik
1234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:158
Interacting mature miRNAs:162
Transcripts:ENSMUST00000096038
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000096038   ⟹   ENSMUSP00000093741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1432,381,076 - 32,407,229 (-)Ensembl
GRCm38.p6 Ensembl1432,659,119 - 32,685,272 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1432,389,774 - 32,407,250 (-)Ensembl
GRCm38.p6 Ensembl1432,667,817 - 32,685,293 (-)Ensembl
RefSeq Acc Id: NM_001195097   ⟹   NP_001182026
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,407,211 (-)NCBI
GRCm381432,659,119 - 32,685,272 (-)NCBI
Celera1428,915,533 - 28,941,706 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001419649   ⟹   NP_001406578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,407,211 (-)NCBI
RefSeq Acc Id: NM_001419650   ⟹   NP_001406579
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,407,211 (-)NCBI
RefSeq Acc Id: NM_001419651   ⟹   NP_001406580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,429,731 (-)NCBI
RefSeq Acc Id: NM_001419652   ⟹   NP_001406581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,429,731 (-)NCBI
RefSeq Acc Id: NM_001419653   ⟹   NP_001406582
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,405,676 (-)NCBI
RefSeq Acc Id: NM_001419654   ⟹   NP_001406583
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,405,676 (-)NCBI
RefSeq Acc Id: XM_006518315   ⟹   XP_006518378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,407,043 (-)NCBI
GRCm381432,659,118 - 32,685,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158329   ⟹   XP_036014222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,381,075 - 32,429,787 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001182026   ⟸   NM_001195097
- UniProtKB: D3Z1D3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518378   ⟸   XM_006518315
- Peptide Label: isoform X1
- UniProtKB: D3Z1D3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000093741   ⟸   ENSMUST00000096038
RefSeq Acc Id: XP_036014222   ⟸   XM_036158329
- Peptide Label: isoform X1
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406581   ⟸   NM_001419652
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406580   ⟸   NM_001419651
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406579   ⟸   NM_001419650
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406578   ⟸   NM_001419649
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406582   ⟸   NM_001419653
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001406583   ⟸   NM_001419654
- UniProtKB: D3Z1D3 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z1D3-F1-model_v2 AlphaFold D3Z1D3 1-1412 view protein structure

Promoters
RGD ID:8681880
Promoter ID:EPDNEW_M18971
Type:initiation region
Name:3425401B19Rik_1
Description:Mus musculus RIKEN cDNA 3425401B19 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381432,685,254 - 32,685,314EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3588196 AgrOrtholog
Ensembl Genes ENSMUSG00000071540 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000096038 ENTREZGENE
  ENSMUST00000096038.4 UniProtKB/Swiss-Prot
InterPro DUF4585 UniProtKB/Swiss-Prot
KEGG Report mmu:100504518 UniProtKB/Swiss-Prot
MGD MGI:3588196 ENTREZGENE
NCBI Gene 100504518 ENTREZGENE
PANTHER CARDIAC-ENRICHED FHL2-INTERACTING PROTEIN UniProtKB/Swiss-Prot
  CARDIAC-ENRICHED FHL2-INTERACTING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam DUF4585 UniProtKB/Swiss-Prot
PhenoGen 3425401B19Rik PhenoGen
UniProt CEFIP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE