8430432A02Rik (RIKEN cDNA 8430432A02 gene) - Rat Genome Database

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Gene: 8430432A02Rik (RIKEN cDNA 8430432A02 gene) Mus musculus
Analyze
Symbol: 8430432A02Rik
Name: RIKEN cDNA 8430432A02 gene
RGD ID: 1613574
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
Previously known as: hypothetical protein LOC71524; translation initiation factor IF-2-like; uncharacterized protein LOC71524
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,131,440 - 43,133,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl143,131,748 - 43,132,995 (+)EnsemblGRCm39 Ensembl
GRCm38143,092,280 - 43,093,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,092,588 - 43,093,835 (+)EnsemblGRCm38mm10GRCm38
Celera143,429,928 - 43,432,362 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map122.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430432A02RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430432A02RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430432A02RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in 8430432A02Rik
60 total Variants

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:164
Interacting mature miRNAs:183
Transcripts:ENSMUST00000039080
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse

1 to 10 of 30 rows





RefSeq Transcripts XM_001472309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK018453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl143,131,748 - 43,132,995 (+)Ensembl
GRCm38.p6 Ensembl143,092,588 - 43,093,835 (+)Ensembl
RefSeq Acc Id: XM_001472309   ⟹   XP_001472359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera143,429,928 - 43,432,362 (+)NCBI
Protein RefSeqs XP_001472359 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB31221 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_001472359   ⟸   XM_001472309

RGD ID:15092127
Promoter ID:EPDNEWNC_M30
Type:single initiation site
Name:8430432A02Rik_1
Description:RIKEN cDNA 8430432A02 gene [Source:MGISymbol;Acc:MGI:1918774]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38143,092,584 - 43,092,644EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000041878 Ensembl
MGD MGI:1918774 ENTREZGENE
NCBI Gene 8430432A02Rik ENTREZGENE
PhenoGen 8430432A02Rik PhenoGen
RNAcentral URS00007648D0 RNACentral
UniProt Q9CRQ4_MOUSE UniProtKB/TrEMBL