0610005C13Rik (RIKEN cDNA 0610005C13 gene) - Rat Genome Database

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Gene: 0610005C13Rik (RIKEN cDNA 0610005C13 gene) Mus musculus
Analyze
Symbol: 0610005C13Rik
Name: RIKEN cDNA 0610005C13 gene
RGD ID: 1613132
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and metanephros.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AI182092; hypothetical protein LOC71661
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,217,219 - 45,224,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,217,213 - 45,224,751 (-)EnsemblGRCm39 Ensembl
GRCm38745,567,795 - 45,575,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,567,794 - 45,575,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,823,164 - 52,830,546 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera741,021,011 - 41,028,393 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
0610005C13RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
0610005C13RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
0610005C13RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693   PMID:21386911   PMID:29716997  



.

.
Variants in 0610005C13Rik
534 total Variants

Predicted Target Of
Summary Value
Count of predictions:1615
Count of miRNA genes:653
Interacting mature miRNAs:784
Transcripts:ENSMUST00000123549, ENSMUST00000130094, ENSMUST00000132138, ENSMUST00000133678, ENSMUST00000135933, ENSMUST00000142260, ENSMUST00000144570, ENSMUST00000145208, ENSMUST00000148383
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse

1 to 10 of 45 rows
AI182092  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,567,853 - 45,568,053UniSTSGRCm38
MGSCv37752,823,223 - 52,823,423UniSTSGRCm37
Celera741,021,070 - 41,021,270UniSTS
Whitehead/MRC_RH7565.32UniSTS
PMC324540P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,575,241 - 45,575,709UniSTSGRCm38
MGSCv37752,830,611 - 52,831,079UniSTSGRCm37
Celera741,028,458 - 41,028,926UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS







Ensembl Acc Id: ENSMUST00000209416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,525 - 45,224,571 (-)Ensembl
GRCm38.p6 Ensembl745,568,101 - 45,575,147 (-)Ensembl
Ensembl Acc Id: ENSMUST00000209510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,583 (-)Ensembl
GRCm38.p6 Ensembl745,568,220 - 45,575,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000209910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,586 (-)Ensembl
GRCm38.p6 Ensembl745,568,174 - 45,575,156 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,597 (-)Ensembl
GRCm38.p6 Ensembl745,567,794 - 45,575,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,740 (-)Ensembl
GRCm38.p6 Ensembl745,567,935 - 45,575,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,218,493 - 45,224,618 (-)Ensembl
GRCm38.p6 Ensembl745,570,175 - 45,575,194 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,218,510 - 45,224,597 (-)Ensembl
GRCm38.p6 Ensembl745,569,086 - 45,575,173 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,221,813 - 45,224,580 (-)Ensembl
GRCm38.p6 Ensembl745,574,073 - 45,575,156 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,751 (-)Ensembl
GRCm38.p6 Ensembl745,568,124 - 45,575,327 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,218,892 - 45,224,581 (-)Ensembl
GRCm38.p6 Ensembl745,570,148 - 45,571,038 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,590 (-)Ensembl
GRCm38.p6 Ensembl745,570,988 - 45,575,138 (-)Ensembl
Ensembl Acc Id: ENSMUST00000246035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,217 - 45,224,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000246844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,586 (-)Ensembl
Ensembl Acc Id: ENSMUST00000247307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,586 (-)Ensembl
Ensembl Acc Id: ENSMUST00000247360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000247382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,613 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,213 - 45,224,583 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,217,218 - 45,224,581 (-)Ensembl
RefSeq Acc Id: NR_038165
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,217,219 - 45,224,600 (-)NCBI
GRCm38745,567,795 - 45,575,176 (-)ENTREZGENE
Celera741,021,012 - 41,028,393 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_038166
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,217,219 - 45,224,600 (-)NCBI
GRCm38745,567,795 - 45,575,176 (-)ENTREZGENE
Celera741,021,012 - 41,028,393 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RGD ID:8664077
Promoter ID:EPDNEW_M10057
Type:multiple initiation site
Name:0610005C13Rik_1
Description:Mus musculus RIKEN cDNA 0610005C13 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,575,157 - 45,575,217EPDNEW
RGD ID:15093240
Promoter ID:EPDNEWNC_M1153
Type:single initiation site
Name:0610005C13Rik_1
Description:RIKEN cDNA 0610005C13 gene [Source:MGISymbol;Acc:MGI:1918911]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,575,157 - 45,575,217EPDNEWNC


1 to 24 of 24 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000109644 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000210383 ENTREZGENE
  ENSMUST00000210569 ENTREZGENE
MGD MGI:1918911 ENTREZGENE
NCBI Gene 71661 ENTREZGENE
PhenoGen 0610005C13Rik PhenoGen
RNAcentral URS000075B458 RNACentral
  URS000075D3B5 RNACentral
  URS00009AEDBB RNACentral
  URS00009B57EF RNACentral
  URS00009BAD38 RNACentral
  URS00009C56D2 RNACentral
  URS0000A86884 RNACentral
  URS00025E7415 RNACentral
  URS00025E87A5 RNACentral
  URS00025EB586 RNACentral
  URS00025EC7A5 RNACentral
  URS00025ED229 RNACentral
  URS00025EDBD9 RNACentral
  URS00025EE14D RNACentral
  URS00025EE509 RNACentral
  URS00025F23B5 RNACentral
  URS00025F3C7D RNACentral
  URS00025F82B9 RNACentral
1 to 24 of 24 rows