9130015G15Rik (RIKEN cDNA 9130015G15 gene) - Rat Genome Database

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Gene: 9130015G15Rik (RIKEN cDNA 9130015G15 gene) Mus musculus
Analyze
Symbol: 9130015G15Rik
Name: RIKEN cDNA 9130015G15 gene
RGD ID: 1611814
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC74567; uncharacterized protein LOC74567
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39748,771,685 - 48,811,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl748,772,082 - 48,809,567 (-)EnsemblGRCm39 Ensembl
GRCm38749,121,937 - 49,162,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,122,334 - 49,159,819 (-)EnsemblGRCm38mm10GRCm38
MGSCv37756,378,934 - 56,389,646 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36756,378,934 - 56,389,646 (-)NCBIMGSCv36mm8
Celera744,567,191 - 44,577,891 (-)NCBICelera
Cytogenetic Map7B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9130015G15RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9130015G15RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9130015G15RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in 9130015G15Rik
2480 total Variants

1 to 10 of 16 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 5q13.3-22.1(chr5:74163186-110809453)x3 copy number gain See cases [RCV000051839] Chr5:74163186..110809453 [GRCh38]
Chr5:73459011..110145153 [GRCh37]
Chr5:73494767..110173052 [NCBI36]
Chr5:5q13.3-22.1		 pathogenic
GRCh38/hg38 5q14.3-15(chr5:87124838-93383020)x3 copy number gain See cases [RCV000051840] Chr5:87124838..93383020 [GRCh38]
Chr5:86420655..92718726 [GRCh37]
Chr5:86456411..92744482 [NCBI36]
Chr5:5q14.3-15		 pathogenic
GRCh38/hg38 5q14.3-15(chr5:88936770-94102018)x1 copy number loss See cases [RCV000053480] Chr5:88936770..94102018 [GRCh38]
Chr5:88232587..93437723 [GRCh37]
Chr5:88268343..93463479 [NCBI36]
Chr5:5q14.3-15		 pathogenic
GRCh38/hg38 5q14.3-21.2(chr5:89081352-104687248)x1 copy number loss See cases [RCV000053516] Chr5:89081352..104687248 [GRCh38]
Chr5:88377169..104022949 [GRCh37]
Chr5:88412925..104050848 [NCBI36]
Chr5:5q14.3-21.2		 pathogenic
GRCh38/hg38 5q14.3(chr5:86743723-92337264)x1 copy number loss See cases [RCV000053477] Chr5:86743723..92337264 [GRCh38]
Chr5:86039540..91633081 [GRCh37]
Chr5:86075296..91668837 [NCBI36]
Chr5:5q14.3		 pathogenic
NG_007083.1:g.371658_507674del deletion Usher syndrome type 2C [RCV000007205] Chr5:90925457..91061473 [GRCh38]
Chr5:90221274..90357290 [GRCh37]
Chr5:5q14.3		 pathogenic
GRCh38/hg38 5q14.3(chr5:86766959-92148845)x1 copy number loss See cases [RCV000141419] Chr5:86766959..92148845 [GRCh38]
Chr5:86062776..91444662 [GRCh37]
Chr5:86098532..91480418 [NCBI36]
Chr5:5q14.3		 pathogenic
GRCh38/hg38 5q14.3-22.1(chr5:84603580-111435081)x1 copy number loss See cases [RCV000139656] Chr5:84603580..111435081 [GRCh38]
Chr5:83899398..110770779 [GRCh37]
Chr5:83935154..110798678 [NCBI36]
Chr5:5q14.3-22.1		 pathogenic
GRCh38/hg38 5q14.3(chr5:88368289-92363231)x1 copy number loss See cases [RCV000140963] Chr5:88368289..92363231 [GRCh38]
Chr5:87664106..91698938 [GRCh37]
Chr5:87699862..91724694 [NCBI36]
Chr5:5q14.3		 pathogenic
GRCh38/hg38 5q14.3-23.3(chr5:90374606-128076423)x1 copy number loss See cases [RCV000139893] Chr5:90374606..128076423 [GRCh38]
Chr5:89670423..127412115 [GRCh37]
Chr5:89706179..127440014 [NCBI36]
Chr5:5q14.3-23.3		 pathogenic
1 to 10 of 16 rows

1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
25314304Vmm1_mvariable multisystem mineralization 1, muzzle (mouse)74714974856549748Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse

1 to 10 of 45 rows






Ensembl Acc Id: ENSMUST00000208621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl748,772,082 - 48,809,567 (-)Ensembl
GRCm38.p6 Ensembl749,122,334 - 49,159,819 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl748,772,082 - 48,784,024 (-)Ensembl
GRCm38.p6 Ensembl749,122,334 - 49,134,276 (-)Ensembl
RefSeq Acc Id: NR_154465
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39748,771,685 - 48,811,906 (-)NCBI
Sequence:
RGD ID:15093248
Promoter ID:EPDNEWNC_M1162
Type:single initiation site
Name:9130015G15Rik_1
Description:RIKEN cDNA 9130015G15 gene [Source:MGISymbol;Acc:MGI:1921817]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38749,134,276 - 49,134,336EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000108950 Ensembl
MGD MGI:1921817 ENTREZGENE
NCBI Gene 9130015G15Rik ENTREZGENE
PhenoGen 9130015G15Rik PhenoGen
RNAcentral URS00009AF0ED RNACentral
  URS00009B822E RNACentral
  URS0000CCDFF9 RNACentral