Ppifos (peptidylprolyl isomerase F, opposite strand) - Rat Genome Database

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Gene: Ppifos (peptidylprolyl isomerase F, opposite strand) Mus musculus
Analyze
Symbol: Ppifos
Name: peptidylprolyl isomerase F, opposite strand
RGD ID: 1611442
MGI Page MGI
Description: INTERACTS WITH bisphenol F; trovafloxacin
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 4930520F12Rik; Ppifs
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,696,780 - 25,701,706 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,697,389 - 25,701,745 (-)EnsemblGRCm39 Ensembl
GRCm381425,696,356 - 25,701,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,696,974 - 25,701,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv371426,515,842 - 26,520,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1422,020,610 - 22,025,536 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1415.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PpifosMousebisphenol F increases expressionEXP 6480464bisphenol F results in increased expression of PPIFOS mRNACTDPMID:38685157
PpifosMousetrovafloxacin increases expressionEXP 6480464trovafloxacin results in increased expression of PPIFOS mRNACTDPMID:35537566


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PpifosMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PpifosMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PpifosMousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in Ppifos
144 total Variants

1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse

1 to 10 of 15 rows
AW457192  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381425,700,164 - 25,700,297UniSTSGRCm38
MGSCv371426,519,650 - 26,519,783UniSTSGRCm37
Celera1422,024,418 - 22,024,551UniSTS
Cytogenetic Map14A3UniSTS
Whitehead/MRC_RH14189.06UniSTS







Ensembl Acc Id: ENSMUST00000224137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1425,697,389 - 25,701,745 (-)Ensembl
GRCm38.p6 Ensembl1425,696,974 - 25,701,282 (-)Ensembl
Ensembl Acc Id: ENSMUST00000370593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1425,697,821 - 25,701,728 (-)Ensembl
RefSeq Acc Id: NR_028021
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391425,696,780 - 25,701,706 (-)NCBI
GRCm381425,696,356 - 25,701,282 (-)ENTREZGENE
MGSCv371426,515,842 - 26,520,768 (-)RGD
Celera1422,020,610 - 22,025,536 (-)RGD
cM Map14 ENTREZGENE
Sequence:
GenBank Protein BAB31835 (Get FASTA)   NCBI Sequence Viewer  

RGD ID:15094411
Promoter ID:EPDNEWNC_M2316
Type:single initiation site
Name:Ppifos_1
Description:peptidylprolyl isomerase F, opposite strand [Source:MGISymbol;Acc:MGI:1915423]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381425,701,266 - 25,701,326EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000114922 Ensembl
MGD MGI:1915423 ENTREZGENE
NCBI Gene 68173 ENTREZGENE
PhenoGen Ppifos PhenoGen
RNAcentral URS000075C148 RNACentral
  URS0000BCB686 RNACentral
UniProt Q9D2G6_MOUSE UniProtKB/TrEMBL


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-06 Ppifos  peptidylprolyl isomerase F, opposite strand    peptidylprolyl isomerase F, opposite strand transcription unit  Symbol and/or name change 5135510 APPROVED