1700026F02Rik (RIKEN cDNA 1700026F02 gene) - Rat Genome Database

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Gene: 1700026F02Rik (RIKEN cDNA 1700026F02 gene) Mus musculus
Analyze
Symbol: 1700026F02Rik
Name: RIKEN cDNA 1700026F02 gene
RGD ID: 1611428
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC69419; uncharacterized protein LOC69419
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,459,372 - 71,479,399 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,400,890 - 71,538,406 (-)EnsemblGRCm39 Ensembl
GRCm38871,006,728 - 71,026,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,948,246 - 71,085,758 (-)EnsemblGRCm38mm10GRCm38
Celera873,532,899 - 73,566,632 (-)NCBICelera
Celera874,568,073 - 74,571,857 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700026F02RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700026F02RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700026F02RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 1700026F02Rik
1312 total Variants

1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse

1 to 10 of 32 rows
D8Mit179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,012,950 - 71,013,088UniSTSGRCm38
MGSCv37873,536,849 - 73,536,987UniSTSGRCm37
Celera874,574,299 - 74,574,437UniSTS
cM Map833.0UniSTS
Whitehead Genetic835.0UniSTS
D8Mit179.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,012,779 - 71,012,889UniSTSGRCm38
MGSCv37873,536,678 - 73,536,788UniSTSGRCm37
Celera874,574,128 - 74,574,238UniSTS
cM Map833.0UniSTS
cM Map8 UniSTS
Whitehead Genetic835.0UniSTS
D8Mit179.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,013,003 - 71,013,112UniSTSGRCm38
MGSCv37873,536,902 - 73,537,011UniSTSGRCm37
Celera874,574,352 - 74,574,461UniSTS
cM Map833.0UniSTS
cM Map8 UniSTS
Whitehead Genetic835.0UniSTS
Whitehead_YAC8 UniSTS






RefSeq Transcripts NR_045487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC019302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000170101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,495,289 - 71,495,684 (-)Ensembl
GRCm38.p6 Ensembl871,042,645 - 71,043,040 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,457,744 - 71,479,475 (-)Ensembl
GRCm38.p6 Ensembl871,006,727 - 71,026,755 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,400,890 - 71,479,408 (-)Ensembl
GRCm38.p6 Ensembl870,948,246 - 71,026,764 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,400,890 - 71,479,408 (-)Ensembl
GRCm38.p6 Ensembl870,948,246 - 71,026,764 (-)Ensembl
Ensembl Acc Id: ENSMUST00000212266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,538,402 (-)Ensembl
GRCm38.p6 Ensembl871,006,728 - 71,085,758 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,538,406 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,538,372 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,538,371 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,473,716 - 71,538,374 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,473,716 - 71,538,372 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,457,999 - 71,479,392 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,024 - 71,479,427 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,479,409 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,525,390 - 71,538,406 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,525,390 - 71,538,404 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,525,390 - 71,538,387 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,525,390 - 71,533,467 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,473,716 - 71,479,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,459,371 - 71,461,525 (-)Ensembl
Ensembl Acc Id: ENSMUST00000307824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,537,880 - 71,538,406 (-)Ensembl
RefSeq Acc Id: NR_045487
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,459,372 - 71,479,399 (-)NCBI
GRCm38871,006,728 - 71,026,755 (-)ENTREZGENE
Celera874,568,073 - 74,571,857 (-)NCBI
Celera873,532,899 - 73,566,632 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RGD ID:8667399
Promoter ID:EPDNEW_M11718
Type:multiple initiation site
Name:1700026F02Rik_1
Description:Mus musculus RIKEN cDNA 1700026F02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,026,751 - 71,026,811EPDNEW
RGD ID:15093459
Promoter ID:EPDNEWNC_M1367
Type:multiple initiation site
Name:1700026F02Rik_1
Description:RIKEN cDNA 1700026F02 gene [Source:MGISymbol;Acc:MGI:1916669]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,026,751 - 71,026,811EPDNEWNC


1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000101854 Ensembl
MGD MGI:1916669 ENTREZGENE
NCBI Gene 69419 ENTREZGENE
PhenoGen 1700026F02Rik PhenoGen
RNAcentral URS000075B006 RNACentral
  URS00007859F9 RNACentral
  URS0000A8DFAA RNACentral
  URS0000AA1F2B RNACentral
  URS0000AAA1A5 RNACentral
  URS0000AACD6A RNACentral
1 to 10 of 10 rows