1700057H21Rik (RIKEN cDNA 1700057H21 gene) - Rat Genome Database

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Gene: 1700057H21Rik (RIKEN cDNA 1700057H21 gene) Mus musculus
Analyze
Symbol: 1700057H21Rik
Name: RIKEN cDNA 1700057H21 gene
RGD ID: 1611345
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73375
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39251,311,062 - 51,327,912 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl251,253,037 - 51,416,699 (-)EnsemblGRCm39 Ensembl
GRCm38251,421,050 - 51,437,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl251,420,984 - 51,438,785 (-)EnsemblGRCm38mm10GRCm38
Celera253,127,662 - 53,147,562 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:185
Interacting mature miRNAs:197
Transcripts:ENSMUST00000152467, ENSMUST00000154530
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000142804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,255,543 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,996 - 51,416,699 (-)Ensembl
GRCm38.p6 Ensembl251,420,984 - 51,438,785 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,062 - 51,327,912 (-)Ensembl
GRCm38.p6 Ensembl251,421,050 - 51,437,900 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,398,225 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,037 - 51,370,497 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,572 - 51,337,784 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,329,529 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,329,556 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,667 - 51,329,529 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,328,012 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,553 - 51,327,933 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,327,917 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,667 - 51,327,916 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,327,916 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,327,913 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,674 - 51,327,868 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,278,788 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,278,790 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,278,791 - 51,327,792 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,060 - 51,329,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,512 - 51,328,026 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,008 - 51,327,962 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,047 - 51,327,925 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,039 - 51,326,357 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,266,820 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,337,794 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,337,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,255,557 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,566 - 51,255,536 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,253,571 - 51,254,287 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,051 - 51,398,225 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,444 - 51,370,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,053 - 51,357,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,446 - 51,337,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,228 - 51,331,718 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,053 - 51,329,558 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,045 - 51,329,185 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,311,057 - 51,327,359 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,310,516 - 51,323,609 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,337,747 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,461 - 51,331,795 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,329,592 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,329,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,465 - 51,329,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,471 - 51,329,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000251536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,327,464 - 51,327,925 (-)Ensembl
RefSeq Acc Id: NR_130155
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39251,311,062 - 51,327,912 (-)NCBI
GRCm38251,421,050 - 51,437,900 (-)NCBI
Celera253,127,662 - 53,147,562 (-)NCBI
Sequence:
Promoters
RGD ID:6877290
Promoter ID:EPDNEW_M2096
Type:multiple initiation site
Name:1700057H21Rik_1
Description:Mus musculus RIKEN cDNA 1700057H21 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38251,437,904 - 51,437,964EPDNEW
RGD ID:15092340
Promoter ID:EPDNEWNC_M249
Type:single initiation site
Name:1700057H21Rik_1
Description:RIKEN cDNA 1700057H21 gene [Source:MGISymbol;Acc:MGI:1920625]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38251,437,904 - 51,437,964EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086007 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000154530 ENTREZGENE
MGD MGI:1920625 ENTREZGENE
NCBI Gene 73375 ENTREZGENE
PhenoGen 1700057H21Rik PhenoGen
RNAcentral URS0000787FD6 RNACentral