Gm5524 (predicted gene 5524) - Rat Genome Database

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Gene: Gm5524 (predicted gene 5524) Mus musculus
Analyze
Symbol: Gm5524
Name: predicted gene 5524
RGD ID: 1609074
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AI875557; EG433281; expressed sequence AI875557
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39127,923,127 - 27,941,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl127,923,059 - 27,941,916 (+)EnsemblGRCm39 Ensembl
GRCm38127,884,046 - 27,902,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl127,884,046 - 27,902,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv37127,940,889 - 27,959,241 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36127,828,593 - 27,846,942 (+)NCBIMGSCv36mm8
Celera127,660,554 - 27,678,622 (+)NCBICelera
Cytogenetic Map1A5NCBI
cM Map110.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24316575   PMID:30132544  


Genomics


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000185409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl127,923,059 - 27,941,916 (+)Ensembl
GRCm38.p6 Ensembl127,884,046 - 27,902,396 (+)Ensembl
Ensembl Acc Id: ENSMUST00000272245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl127,923,079 - 27,941,332 (+)Ensembl
Ensembl Acc Id: ENSMUST00000272246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl127,923,121 - 27,941,272 (+)Ensembl
RefSeq Acc Id: NR_151583
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39127,923,127 - 27,941,268 (+)NCBI
GRCm38127,884,046 - 27,902,187 (+)NCBI
Sequence:
Promoters
RGD ID:6873342
Promoter ID:EPDNEW_M122
Type:multiple initiation site
Name:Gm5524_1
Description:Mus musculus predicted gene 5524 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38127,884,041 - 27,884,101EPDNEW
RGD ID:15092103
Promoter ID:EPDNEWNC_M15
Type:single initiation site
Name:Gm5524_1
Description:predicted gene 5524 [Source:MGI Symbol;Acc:MGI:3646041]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38127,884,041 - 27,884,101EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101514 Ensembl
MGD MGI:3646041 ENTREZGENE
NCBI Gene 433281 ENTREZGENE
PhenoGen Gm5524 PhenoGen
RNAcentral URS0000CCE0E8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 Gm5524  predicted gene 5524  AI875557  expressed sequence AI875557  Symbol and/or name change 5135510 APPROVED