4930512H18Rik (RIKEN cDNA 4930512H18 gene) - Rat Genome Database

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Gene: 4930512H18Rik (RIKEN cDNA 4930512H18 gene) Mus musculus
Analyze
Symbol: 4930512H18Rik
Name: RIKEN cDNA 4930512H18 gene
RGD ID: 1608691
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC75111
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39862,302,040 - 62,375,869 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl862,301,804 - 62,375,868 (+)EnsemblGRCm39 Ensembl
GRCm38861,910,805 - 61,922,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,849,006 - 61,922,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv37864,327,803 - 64,401,632 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera864,421,750 - 64,495,343 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map831.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930512H18RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930512H18RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930512H18RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  



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Variants in 4930512H18Rik
5677 total Variants

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:106
Interacting mature miRNAs:111
Transcripts:ENSMUST00000133752
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse

1 to 10 of 25 rows
D8Ertd252e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38861,878,608 - 61,878,825UniSTSGRCm38
MGSCv37864,357,405 - 64,357,622UniSTSGRCm37
Celera864,451,085 - 64,451,302UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map832.0UniSTS







Ensembl Acc Id: ENSMUST00000133752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,301,827 - 62,375,868 (+)Ensembl
GRCm38.p6 Ensembl861,849,006 - 61,922,834 (+)Ensembl
Ensembl Acc Id: ENSMUST00000211790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,073 - 62,375,868 (+)Ensembl
GRCm38.p6 Ensembl861,913,060 - 61,922,834 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,301,804 - 62,304,584 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,094 - 62,375,170 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,094 - 62,375,168 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,096 - 62,375,168 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,059 - 62,375,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,366,096 - 62,367,695 (+)Ensembl
Ensembl Acc Id: ENSMUST00000344725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl862,367,128 - 62,367,722 (+)Ensembl
RefSeq Acc Id: NR_190142
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39862,302,040 - 62,375,869 (+)NCBI
RGD ID:8667203
Promoter ID:EPDNEW_M11610
Type:single initiation site
Name:AK015772_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38861,913,062 - 61,913,122EPDNEW
RGD ID:15093467
Promoter ID:EPDNEWNC_M1359
Type:single initiation site
Name:4930512H18Rik_1
Description:RIKEN cDNA 4930512H18 gene [Source:MGISymbol;Acc:MGI:1922361]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38861,913,062 - 61,913,122EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000086866 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000133752 ENTREZGENE
MGD MGI:1922361 ENTREZGENE
NCBI Gene 75111 ENTREZGENE
PhenoGen 4930512H18Rik PhenoGen
RNAcentral URS000077C1B2 RNACentral
  URS00009AD9BA RNACentral
  URS0002853ACC RNACentral