4930512H18Rik (RIKEN cDNA 4930512H18 gene) - Rat Genome Database
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Gene: 4930512H18Rik (RIKEN cDNA 4930512H18 gene) Mus musculus
Analyze
Symbol: 4930512H18Rik
Name: RIKEN cDNA 4930512H18 gene
RGD ID: 1608691
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: MODEL
Also known as: hypothetical protein LOC75111
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39862,365,700 - 62,377,802 (+)NCBIGRCm39mm39
GRCm38861,910,805 - 61,922,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,849,006 - 61,922,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv37864,327,803 - 64,401,632 (+)NCBIGRCm37mm9NCBIm37
Celera864,421,750 - 64,495,343 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Position Markers
D8Ertd252e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38861,878,608 - 61,878,825UniSTSGRCm38
MGSCv37864,357,405 - 64,357,622UniSTSGRCm37
Celera864,451,085 - 64,451,302UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map832.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:106
Interacting mature miRNAs:111
Transcripts:ENSMUST00000133752
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000133752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl861,849,006 - 61,922,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211790
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl861,913,060 - 61,922,834 (+)Ensembl
RefSeq Acc Id: XR_379016
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39862,372,681 - 62,377,802 (+)NCBI
GRCm38861,919,647 - 61,922,837 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870457
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39862,365,700 - 62,377,802 (+)NCBI
GRCm38861,910,805 - 61,922,837 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870458
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39862,365,700 - 62,377,802 (+)NCBI
GRCm38861,913,060 - 61,922,837 (+)NCBI
Sequence:
Promoters
RGD ID:8667203
Promoter ID:EPDNEW_M11610
Type:single initiation site
Name:AK015772_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38861,913,062 - 61,913,122EPDNEW
RGD ID:15093467
Promoter ID:EPDNEWNC_M1359
Type:single initiation site
Name:4930512H18Rik_1
Description:RIKEN cDNA 4930512H18 gene [Source:MGISymbol;Acc:MGI:1922361]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38861,913,062 - 61,913,122EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086866 Ensembl
MGD MGI:1922361 ENTREZGENE
NCBI Gene 75111 ENTREZGENE
PhenoGen 4930512H18Rik PhenoGen
UniGene Mm.440931 ENTREZGENE