Mir7-2 (microRNA 7-2) - Rat Genome Database

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Gene: Mir7-2 (microRNA 7-2) Mus musculus
Analyze
No known orthologs.
Symbol: Mir7-2
Name: microRNA 7-2
RGD ID: 1608172
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to leukemia inhibitory factor; intestinal epithelial cell development; and long-term synaptic potentiation. Is expressed in several structures, including brain; eye; foregut-midgut junction; genitourinary system; and hemolymphoid system gland.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mir; mir-; mir-7a-2; mir-7a2; Mir7a2; Mirn; Mirn7-2; mmu-mir-; mmu-mir-7; mmu-mir-7-2; mmu-mir-7a2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39778,538,025 - 78,538,121 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl778,538,025 - 78,538,121 (+)EnsemblGRCm39 Ensembl
GRCm38778,888,277 - 78,888,373 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl778,888,277 - 78,888,373 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,033,163 - 86,033,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera776,293,758 - 76,293,854 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir7-2Mousetitanium dioxide decreases methylationEXP 6480464titanium dioxide results in decreased methylation of MIR7-2 promoterCTDPMID:35295148


Biological Process

  

PMID:12624257   PMID:15538371   PMID:15634332   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17597072   PMID:17604727   PMID:17936263   PMID:19628698   PMID:20106983   PMID:20215419  
PMID:20230785   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21247879   PMID:21267068   PMID:21307095   PMID:21822254   PMID:21993888   PMID:22144232   PMID:22186137   PMID:22570807  
PMID:22696677   PMID:22764048   PMID:23223022   PMID:23390484   PMID:23446348   PMID:23940725   PMID:24789908   PMID:24813889   PMID:25048085   PMID:25334070   PMID:25858512   PMID:26676570  
PMID:28218621   PMID:28218624   PMID:28798046   PMID:29887379   PMID:30538177   PMID:30578296   PMID:30982661   PMID:31044367   PMID:31166710   PMID:31562534   PMID:31756561   PMID:33125780  
PMID:33248443   PMID:33748999   PMID:34697773   PMID:35652338   PMID:35955699   PMID:35988296   PMID:36175420   PMID:36883209   PMID:38446664   PMID:38494663   PMID:38942170   PMID:39055950  



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Variants in Mir7-2
4 total Variants

Predicted Targets
Summary Value
Count of predictions:21992
Count of gene targets:8743
Count of transcripts:14279
Interacting mature miRNAs:mmu-miR-7a-2-3p, mmu-miR-7a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse

1 to 10 of 58 rows





RefSeq Transcripts NR_029826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC138376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LM608656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,538,025 - 78,538,121 (+)Ensembl
GRCm38.p6 Ensembl778,888,277 - 78,888,373 (+)Ensembl
RefSeq Acc Id: NR_029826
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39778,538,025 - 78,538,121 (+)NCBI
GRCm38778,888,277 - 78,888,373 (+)ENTREZGENE
MGSCv37786,033,163 - 86,033,259 (+)RGD
Celera776,293,758 - 76,293,854 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RGD ID:8664477
Promoter ID:EPDNEW_M10269
Type:single initiation site
Name:Mir7-2_1
Description:Mus musculus microRNA 7-2 (Mir7-2), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38778,888,359 - 78,888,419EPDNEW


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000065609 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083675 ENTREZGENE
MGD MGI:3619437 ENTREZGENE
miRBase MI0000729 ENTREZGENE
NCBI Gene 723884 ENTREZGENE
PhenoGen Mir7-2 PhenoGen
RNAcentral URS00001E2E5B RNACentral
  URS0000591950 RNACentral
  URS000075EBE8 RNACentral
1 to 9 of 9 rows