Mir7-2 (microRNA 7-2) - Rat Genome Database

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Gene: Mir7-2 (microRNA 7-2) Mus musculus
Analyze
No known orthologs.
Symbol: Mir7-2
Name: microRNA 7-2
RGD ID: 1608172
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to forskolin; cellular response to leukemia inhibitory factor; and long-term synaptic potentiation. Is expressed in several structures, including brain; eye; foregut-midgut junction; genitourinary system; and hemolymphoid system gland.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mir; mir-; mir-7a-2; mir-7a2; Mir7a2; Mirn; Mirn7-2; mmu-mir-; mmu-mir-7; mmu-mir-7-2; mmu-mir-7a2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39778,538,025 - 78,538,121 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl778,538,025 - 78,538,121 (+)EnsemblGRCm39 Ensembl
GRCm38778,888,277 - 78,888,373 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl778,888,277 - 78,888,373 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,033,163 - 86,033,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera776,293,758 - 76,293,854 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12624257   PMID:15538371   PMID:15634332   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17597072   PMID:17604727   PMID:17936263   PMID:19628698   PMID:20106983   PMID:20215419  
PMID:20230785   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21247879   PMID:21267068   PMID:21307095   PMID:21822254   PMID:21993888   PMID:22144232   PMID:22186137   PMID:22570807  
PMID:22696677   PMID:22764048   PMID:23223022   PMID:23390484   PMID:23446348   PMID:23940725   PMID:24789908   PMID:24813889   PMID:25048085   PMID:25334070   PMID:25858512   PMID:26676570  
PMID:28218621   PMID:28218624   PMID:28798046   PMID:29887379   PMID:30538177   PMID:30578296   PMID:30982661   PMID:31044367   PMID:31166710   PMID:31562534   PMID:31756561   PMID:33125780  
PMID:33248443   PMID:33748999   PMID:34697773   PMID:35652338   PMID:35955699   PMID:35988296   PMID:36175420   PMID:36883209   PMID:38446664   PMID:38494663   PMID:38942170   PMID:39055950  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:21992
Count of gene targets:8743
Count of transcripts:14279
Interacting mature miRNAs:mmu-miR-7a-2-3p, mmu-miR-7a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
13513914Heal52_mwound healing/ regeneration 52 (mouse)77355037278591455Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000083675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,538,025 - 78,538,121 (+)Ensembl
GRCm38.p6 Ensembl778,888,277 - 78,888,373 (+)Ensembl
RefSeq Acc Id: NR_029826
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39778,538,025 - 78,538,121 (+)NCBI
GRCm38778,888,277 - 78,888,373 (+)ENTREZGENE
MGSCv37786,033,163 - 86,033,259 (+)RGD
Celera776,293,758 - 76,293,854 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Promoters
RGD ID:8664477
Promoter ID:EPDNEW_M10269
Type:single initiation site
Name:Mir7-2_1
Description:Mus musculus microRNA 7-2 (Mir7-2), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38778,888,359 - 78,888,419EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065609 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083675 ENTREZGENE
MGD MGI:3619437 ENTREZGENE
miRBase MI0000729 ENTREZGENE
NCBI Gene 723884 ENTREZGENE
PhenoGen Mir7-2 PhenoGen
RNAcentral URS00001E2E5B RNACentral
  URS0000591950 RNACentral
  URS000075EBE8 RNACentral