4933439K11Rik (RIKEN cDNA 4933439K11 gene) - Rat Genome Database

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Gene: 4933439K11Rik (RIKEN cDNA 4933439K11 gene) Mus musculus
Analyze
Symbol: 4933439K11Rik
Name: RIKEN cDNA 4933439K11 gene
RGD ID: 1608108
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC71319
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,369,187 - 172,378,373 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,365,700 - 172,385,696 (-)EnsemblGRCm39 Ensembl
GRCm381172,541,620 - 172,550,806 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,538,133 - 172,558,129 (-)EnsemblGRCm38mm10GRCm38
Celera1175,395,813 - 175,404,900 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4933439K11RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4933439K11RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4933439K11RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:27899360  



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Variants in 4933439K11Rik
462 total Variants

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:239
Interacting mature miRNAs:259
Transcripts:ENSMUST00000132370, ENSMUST00000140307, ENSMUST00000169111
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 117 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse

1 to 10 of 117 rows






Ensembl Acc Id: ENSMUST00000132370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,365,700 - 172,378,255 (-)Ensembl
GRCm38.p6 Ensembl1172,538,133 - 172,550,669 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,369,186 - 172,378,405 (-)Ensembl
GRCm38.p6 Ensembl1172,541,620 - 172,550,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,376,825 - 172,385,696 (-)Ensembl
GRCm38.p6 Ensembl1172,549,258 - 172,558,129 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,376,815 - 172,378,298 (-)Ensembl
RefSeq Acc Id: NR_040558
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,369,187 - 172,378,373 (-)NCBI
GRCm381172,541,620 - 172,550,806 (-)ENTREZGENE
Celera1175,395,813 - 175,404,900 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RGD ID:15092255
Promoter ID:EPDNEWNC_M160
Type:multiple initiation site
Name:4933439K11Rik_1
Description:RIKEN cDNA 4933439K11 gene [Source:MGISymbol;Acc:MGI:1918569]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,550,686 - 172,550,746EPDNEWNC
RGD ID:15092253
Promoter ID:EPDNEWNC_M161
Type:multiple initiation site
Name:4933439K11Rik_2
Description:RIKEN cDNA 4933439K11 gene [Source:MGISymbol;Acc:MGI:1918569]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,558,136 - 172,558,196EPDNEWNC


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085184 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000140307 ENTREZGENE
MGD MGI:1918569 ENTREZGENE
NCBI Gene 71319 ENTREZGENE
PhenoGen 4933439K11Rik PhenoGen
RNAcentral URS000075AC44 RNACentral
  URS00009BE4E4 RNACentral
  URS00009C2A82 RNACentral
  URS00025EEA2B RNACentral
1 to 9 of 9 rows