Mir212 (microRNA 212) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mir212 (microRNA 212) Mus musculus
Analyze
Symbol: Mir212
Name: microRNA 212
RGD ID: 1607678
MGI Page MGI
Description: Acts upstream of or within regulation of dendrite development and regulation of neuron maturation. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MIR212 (microRNA 212).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-212; Mirn; Mirn212; mmu-mir-2; mmu-mir-212
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,064,214 - 75,064,304 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,064,214 - 75,064,304 (+)EnsemblGRCm39 Ensembl
GRCm381175,173,388 - 75,173,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,173,388 - 75,173,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,986,890 - 74,986,980 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1182,680,332 - 82,680,422 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MicroRNA-212 suppresses tumor growth of human hepatocellular carcinoma by targeting FOXA1. Dou C, etal., Oncotarget. 2015 May 30;6(15):13216-28.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. De-repression of FOXO3a death axis by microRNA-132 and -212 causes neuronal apoptosis in Alzheimer's disease. Wong HK, etal., Hum Mol Genet. 2013 Aug 1;22(15):3077-92. doi: 10.1093/hmg/ddt164. Epub 2013 Apr 11.
Additional References at PubMed
PMID:12554860   PMID:12624257   PMID:15634332   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18594913   PMID:20215419   PMID:20307261   PMID:20413612   PMID:21037258   PMID:21057503  
PMID:21059906   PMID:21267068   PMID:21372146   PMID:22367207   PMID:23264652   PMID:23658634   PMID:23818645   PMID:25375881   PMID:25635942   PMID:25813747   PMID:25862525   PMID:25945589  
PMID:26084022   PMID:26207424   PMID:26362250   PMID:26371188   PMID:26773099   PMID:27484949   PMID:27940320   PMID:28244951   PMID:28314201   PMID:28423315   PMID:28448626   PMID:28534484  
PMID:28667176   PMID:28855274   PMID:28912247   PMID:28988887   PMID:29307832   PMID:30342060   PMID:30552827   PMID:30679653   PMID:31533781   PMID:31891679   PMID:32089625   PMID:32246981  
PMID:32268073   PMID:33495813   PMID:34117507   PMID:34359879   PMID:34507876   PMID:34889698   PMID:35053378   PMID:37140946   PMID:37875175   PMID:38000494   PMID:38019469   PMID:39252021  


Genomics

Comparative Map Data
Mir212
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,064,214 - 75,064,304 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,064,214 - 75,064,304 (+)EnsemblGRCm39 Ensembl
GRCm381175,173,388 - 75,173,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,173,388 - 75,173,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,986,890 - 74,986,980 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1182,680,332 - 82,680,422 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
MIR212
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38172,050,271 - 2,050,380 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl172,050,271 - 2,050,380 (-)EnsemblGRCh38hg38GRCh38
GRCh37171,953,565 - 1,953,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,900,314 - 1,900,423 (-)NCBINCBI36Build 36hg18NCBI36
Celera171,970,210 - 1,970,319 (-)NCBICelera
Cytogenetic Map17p13.3NCBI
CHM1_1171,962,332 - 1,962,441 (-)NCBICHM1_1
T2T-CHM13v2.0171,938,175 - 1,938,284 (-)NCBIT2T-CHM13v2.0
Mir212
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81060,521,740 - 60,521,850 (+)NCBIGRCr8
mRatBN7.21060,023,403 - 60,023,513 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1060,023,403 - 60,023,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1064,670,012 - 64,670,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01064,175,594 - 64,175,704 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01059,637,976 - 59,638,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01062,014,702 - 62,014,812 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,014,702 - 62,014,812 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01061,729,092 - 61,729,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1059,053,356 - 59,053,466 (+)NCBICelera
Cytogenetic Map10q24NCBI
MIR212
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1946,153,913 - 46,153,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl946,153,903 - 46,153,984 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha945,304,007 - 45,304,068 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,984,763 - 46,984,824 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl946,984,753 - 46,984,834 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1945,751,813 - 45,751,874 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0946,046,153 - 46,046,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0946,101,187 - 46,101,248 (-)NCBIUU_Cfam_GSD_1.0
MIR212
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,163,046 - 48,163,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11248,163,054 - 48,163,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21250,016,151 - 50,016,232 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Mir212
4 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:23296
Count of gene targets:10264
Count of transcripts:17360
Interacting mature miRNAs:mmu-miR-212-3p, mmu-miR-212-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000083656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,064,214 - 75,064,304 (+)Ensembl
GRCm38.p6 Ensembl1175,173,388 - 75,173,478 (+)Ensembl
RefSeq Acc Id: NR_029794
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,064,214 - 75,064,304 (+)NCBI
GRCm381175,173,388 - 75,173,478 (+)ENTREZGENE
MGSCv371174,986,890 - 74,986,980 (+)RGD
Celera1182,680,332 - 82,680,422 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676888 AgrOrtholog
Ensembl Genes ENSMUSG00000065590 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083656 ENTREZGENE
MGD MGI:2676888 ENTREZGENE
miRBase MI0000696 ENTREZGENE
NCBI Gene 387208 ENTREZGENE
PhenoGen Mir212 PhenoGen
RNAcentral URS00001AFC71 RNACentral
  URS00005D93A0 RNACentral
  URS000075DCDB RNACentral