Mir26b (microRNA 26b) - Rat Genome Database

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Gene: Mir26b (microRNA 26b) Mus musculus
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Symbol: Mir26b
Name: microRNA 26b
RGD ID: 1607667
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to lipopolysaccharide; long-term synaptic potentiation; and negative regulation of macromolecule metabolic process. Located in extracellular exosome. Part of RISC complex. Is expressed in several structures, including bladder; brain; liver; olfactory epithelium; and thymus. Orthologous to human MIR26B (microRNA 26b).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-26b; Mirn; Mirn26b; mmu-mir-2; mmu-mir-26b
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,433,469 - 74,433,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,433,469 - 74,433,553 (+)EnsemblGRCm39 Ensembl
GRCm38174,394,310 - 74,394,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,394,310 - 74,394,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,440,884 - 74,440,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera174,951,776 - 74,951,860 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12007417   PMID:12554860   PMID:12919684   PMID:15538371   PMID:15845075   PMID:16381832   PMID:16766679   PMID:17369397   PMID:17604727   PMID:18723672   PMID:18762567   PMID:20215419  
PMID:20223197   PMID:20413612   PMID:20807761   PMID:21037258   PMID:21267068   PMID:21822254   PMID:22210897   PMID:22219180   PMID:22678827   PMID:23543060   PMID:24205035   PMID:25766405  
PMID:25858512   PMID:25907560   PMID:26637059   PMID:26847596   PMID:28079129   PMID:28487943   PMID:28570839   PMID:28622289   PMID:28810055   PMID:29515367   PMID:30266657   PMID:30679074  
PMID:30982661   PMID:31397837   PMID:31488578   PMID:32760291   PMID:33839982   PMID:34049010   PMID:34559207   PMID:35594995   PMID:37296636   PMID:37682013   PMID:37728849   PMID:38374072  
PMID:38909697  


Genomics

Comparative Map Data
Mir26b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,433,469 - 74,433,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,433,469 - 74,433,553 (+)EnsemblGRCm39 Ensembl
GRCm38174,394,310 - 74,394,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,394,310 - 74,394,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,440,884 - 74,440,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera174,951,776 - 74,951,860 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.54NCBI
MIR26B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,402,646 - 218,402,722 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,402,646 - 218,402,722 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,267,369 - 219,267,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,975,612 - 218,975,688 (+)NCBINCBI36Build 36hg18NCBI36
Celera2213,033,991 - 213,034,067 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,120,493 - 211,120,569 (+)NCBIHuRef
CHM1_12219,274,015 - 219,274,091 (+)NCBICHM1_1
T2T-CHM13v2.02218,888,776 - 218,888,852 (+)NCBIT2T-CHM13v2.0
Mir26b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,425,709 - 83,425,793 (+)NCBIGRCr8
mRatBN7.2975,976,596 - 75,976,680 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,976,596 - 75,976,680 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,421,635 - 84,421,719 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,550,579 - 89,550,663 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,936,763 - 87,936,847 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,675,275 - 81,675,359 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,675,275 - 81,675,359 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,439,824 - 81,439,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera973,549,881 - 73,549,965 (+)NCBICelera
Cytogenetic Map9q33NCBI
MIR26B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,054,488 - 25,054,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,874,324 - 25,874,379 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,070,024 - 25,070,079 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13724,975,567 - 24,975,622 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,909,238 - 24,909,293 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,929,592 - 24,929,647 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:22549
Count of gene targets:8964
Count of transcripts:14797
Interacting mature miRNAs:mmu-miR-26b-3p, mmu-miR-26b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000083534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,433,469 - 74,433,553 (+)Ensembl
GRCm38.p6 Ensembl174,394,310 - 74,394,394 (+)Ensembl
RefSeq Acc Id: NR_029743
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,433,469 - 74,433,553 (+)NCBI
GRCm38174,394,310 - 74,394,394 (+)ENTREZGENE
MGSCv37174,440,884 - 74,440,968 (+)RGD
Celera174,951,776 - 74,951,860 (+)RGD
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676901 AgrOrtholog
Ensembl Genes ENSMUSG00000065468 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083534 ENTREZGENE
MGD MGI:2676901 ENTREZGENE
miRBase MI0000575 ENTREZGENE
NCBI Gene 387219 ENTREZGENE
PhenoGen Mir26b PhenoGen
RNAcentral URS000003ABC4 RNACentral
  URS0000316FA5 RNACentral
  URS000075DD14 RNACentral