MGAT4D (MGAT4 family member D) - Rat Genome Database

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Gene: MGAT4D (MGAT4 family member D) Homo sapiens
Analyze
Symbol: MGAT4D
Name: MGAT4 family member D
RGD ID: 1605861
HGNC Page HGNC:43619
Description: Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in Golgi stack; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D; glycosyltransferase 54 domain containing 1; GnT1IP; mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase family, member D; MGAT4 family, member D; MGC43429
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,442,262 - 140,498,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,442,262 - 140,498,377 (-)EnsemblGRCh38hg38GRCh38
GRCh374141,363,416 - 141,419,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,583,979 - 141,638,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera4138,694,536 - 138,749,502 (-)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4137,094,997 - 137,149,992 (-)NCBIHuRef
CHM1_14141,341,868 - 141,396,867 (-)NCBICHM1_1
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15815621   PMID:16773575   PMID:17903293   PMID:20805325   PMID:21873635   PMID:26371870   PMID:30021884   PMID:32763972  


Genomics

Comparative Map Data
MGAT4D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,442,262 - 140,498,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,442,262 - 140,498,377 (-)EnsemblGRCh38hg38GRCh38
GRCh374141,363,416 - 141,419,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,583,979 - 141,638,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera4138,694,536 - 138,749,502 (-)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4137,094,997 - 137,149,992 (-)NCBIHuRef
CHM1_14141,341,868 - 141,396,867 (-)NCBICHM1_1
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBIT2T-CHM13v2.0
Mgat4d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,075,101 - 84,106,031 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,075,100 - 84,108,949 (+)EnsemblGRCm39 Ensembl
GRCm38883,348,472 - 83,379,402 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,348,471 - 83,382,320 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,872,371 - 85,903,301 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,238,577 - 86,269,507 (+)NCBIMGSCv36mm8
Celera887,636,311 - 87,669,782 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.84NCBI
Mgat4d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,644,744 - 41,681,583 (-)NCBIGRCr8
mRatBN7.21924,740,068 - 24,777,012 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,740,078 - 24,777,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,559,553 - 31,596,164 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,213,949 - 32,250,568 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,431,626 - 34,468,527 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,494,366 - 24,534,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,496,569 - 24,532,772 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,474,577 - 35,510,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,447,874 - 26,495,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,452,699 - 26,500,608 (-)NCBI
Celera1924,280,376 - 24,316,664 (-)NCBICelera
Cytogenetic Map19q11NCBI
Mgat4d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,328,352 - 3,348,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,316,031 - 3,352,945 (+)NCBIChiLan1.0ChiLan1.0
MGAT4D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,316,511 - 138,381,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,704,129 - 138,769,185 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,804,533 - 132,861,460 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,114,989 - 144,170,880 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,112,540 - 144,170,880 (-)Ensemblpanpan1.1panPan2
MGAT4D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,337,082 - 2,391,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,339,749 - 2,391,188 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha192,586,240 - 2,638,029 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,404,072 - 2,455,817 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,404,072 - 2,455,502 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,341,031 - 2,392,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,702,511 - 2,754,228 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,058,461 - 3,110,250 (+)NCBIUU_Cfam_GSD_1.0
Mgat4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,874,094 - 49,919,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,311,511 - 7,349,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,311,511 - 7,347,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT4D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,568,711 - 86,614,124 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,566,554 - 86,617,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2892,070,941 - 92,108,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT4D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,389,476 - 87,439,358 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl787,398,249 - 87,438,739 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603766,913,163 - 66,983,549 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat4d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462500696,132 - 114,422 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q28.2-31.21(chr4:128119872-142431375)x1 copy number loss See cases [RCV000051056] Chr4:128119872..142431375 [GRCh38]
Chr4:129041027..143352528 [GRCh37]
Chr4:129260477..143571978 [NCBI36]
Chr4:4q28.2-31.21
pathogenic
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2
pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21
pathogenic
GRCh38/hg38 4q31.1-35.2(chr4:138510532-189963195)x3 copy number gain See cases [RCV000136810] Chr4:138510532..189963195 [GRCh38]
Chr4:139431686..190828225 [GRCh37]
Chr4:139651136..191121344 [NCBI36]
Chr4:4q31.1-35.2
pathogenic
GRCh38/hg38 4q28.3-35.2(chr4:131985253-190095391)x3 copy number gain See cases [RCV000137721] Chr4:131985253..190095391 [GRCh38]
Chr4:132906408..190828225 [GRCh37]
Chr4:133125858..191250527 [NCBI36]
Chr4:4q28.3-35.2
pathogenic|likely benign
GRCh38/hg38 4q28.1-35.1(chr4:125432943-185761887)x3 copy number gain See cases [RCV000138578] Chr4:125432943..185761887 [GRCh38]
Chr4:126354098..186683041 [GRCh37]
Chr4:126573548..186920035 [NCBI36]
Chr4:4q28.1-35.1
pathogenic|likely benign
GRCh38/hg38 4q28.3-35.2(chr4:134935616-190036318)x3 copy number gain See cases [RCV000143559] Chr4:134935616..190036318 [GRCh38]
Chr4:135856771..190957473 [GRCh37]
Chr4:136076221..191194467 [NCBI36]
Chr4:4q28.3-35.2
pathogenic
GRCh37/hg19 4q28.3-35.1(chr4:136912336-184253252)x3 copy number gain See cases [RCV000240245] Chr4:136912336..184253252 [GRCh37]
Chr4:4q28.3-35.1
pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3 copy number gain See cases [RCV000240392] Chr4:119437495..190904301 [GRCh37]
Chr4:4q26-35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3 copy number gain See cases [RCV000511945] Chr4:109199664..189752726 [GRCh37]
Chr4:4q25-35.2
pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q31.1(chr4:140924159-141492943)x3 copy number gain not provided [RCV000682459] Chr4:140924159..141492943 [GRCh37]
Chr4:4q31.1
uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q28.3-31.21(chr4:137901978-141527647)x1 copy number loss not provided [RCV001005599] Chr4:137901978..141527647 [GRCh37]
Chr4:4q28.3-31.21
pathogenic
GRCh37/hg19 4q31.1-31.21(chr4:139531815-146095109)x1 copy number loss not provided [RCV001005600] Chr4:139531815..146095109 [GRCh37]
Chr4:4q31.1-31.21
pathogenic
GRCh37/hg19 4q31.1-31.21(chr4:141176846-142078534)x3 copy number gain not provided [RCV000847175] Chr4:141176846..142078534 [GRCh37]
Chr4:4q31.1-31.21
uncertain significance
GRCh37/hg19 4q28.3-31.21(chr4:134054911-142601496)x1 copy number loss not provided [RCV000847693] Chr4:134054911..142601496 [GRCh37]
Chr4:4q28.3-31.21
uncertain significance
GRCh37/hg19 4q28.1-35.1(chr4:124873497-185278662)x3 copy number gain not provided [RCV000849686] Chr4:124873497..185278662 [GRCh37]
Chr4:4q28.1-35.1
pathogenic
GRCh37/hg19 4q31.1-31.21(chr4:140522019-146347867)x1 copy number loss not provided [RCV000848032] Chr4:140522019..146347867 [GRCh37]
Chr4:4q31.1-31.21
uncertain significance
GRCh37/hg19 4q28.3-32.3(chr4:131303317-168722402)x3 copy number gain not provided [RCV001537926] Chr4:131303317..168722402 [GRCh37]
Chr4:4q28.3-32.3
pathogenic
GRCh37/hg19 4q28.3-31.21(chr4:136529470-141564812)x1 copy number loss not provided [RCV001833074] Chr4:136529470..141564812 [GRCh37]
Chr4:4q28.3-31.21
pathogenic
GRCh37/hg19 4q24-31.21(chr4:104715235-145252595) copy number gain not specified [RCV002053446] Chr4:104715235..145252595 [GRCh37]
Chr4:4q24-31.21
pathogenic
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21
pathogenic
GRCh37/hg19 4q28.3-31.21(chr4:138289049-145923298)x1 copy number loss not provided [RCV001834392] Chr4:138289049..145923298 [GRCh37]
Chr4:4q28.3-31.21
pathogenic
GRCh37/hg19 4q28.3-31.21(chr4:136035308-144718930) copy number gain not specified [RCV002053457] Chr4:136035308..144718930 [GRCh37]
Chr4:4q28.3-31.21
uncertain significance
GRCh37/hg19 4q26-32.3(chr4:117518683-168174703)x3 copy number gain not provided [RCV003484198] Chr4:117518683..168174703 [GRCh37]
Chr4:4q26-32.3
pathogenic
GRCh37/hg19 4q27-35.2(chr4:123399154-190957473)x3 copy number gain not specified [RCV003986533] Chr4:123399154..190957473 [GRCh37]
Chr4:4q27-35.2
pathogenic
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3 copy number gain not specified [RCV003986496] Chr4:101203509..190957473 [GRCh37]
Chr4:4q24-35.2
pathogenic
GRCh37/hg19 4q31.1(chr4:140930352-141499318)x3 copy number gain not specified [RCV003986494] Chr4:140930352..141499318 [GRCh37]
Chr4:4q31.1
uncertain significance
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:940
Count of miRNA genes:510
Interacting mature miRNAs:552
Transcripts:ENST00000503109, ENST00000509091, ENST00000511113, ENST00000511632, ENST00000513018, ENST00000513106, ENST00000515121, ENST00000515354, ENST00000515402
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
149 302 370 276 1306 421 491 82 116 51 210 770 726 2 1295 122 775 364 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011531665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054349013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_938697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI826002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI828214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB444046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB462368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000503109   ⟹   ENSP00000426225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,449,956 - 140,498,222 (-)Ensembl
Ensembl Acc Id: ENST00000509091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,464,981 - 140,498,377 (-)Ensembl
Ensembl Acc Id: ENST00000511113   ⟹   ENSP00000421185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,442,262 - 140,498,293 (-)Ensembl
Ensembl Acc Id: ENST00000511632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,443,198 - 140,498,252 (-)Ensembl
Ensembl Acc Id: ENST00000513018   ⟹   ENSP00000422714
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,443,218 - 140,459,567 (-)Ensembl
Ensembl Acc Id: ENST00000513106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,443,433 - 140,498,332 (-)Ensembl
Ensembl Acc Id: ENST00000515121   ⟹   ENSP00000425945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,443,421 - 140,498,370 (-)Ensembl
Ensembl Acc Id: ENST00000515354   ⟹   ENSP00000423767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,442,262 - 140,498,353 (-)Ensembl
Ensembl Acc Id: ENST00000515402   ⟹   ENSP00000423768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4140,464,945 - 140,498,330 (-)Ensembl
RefSeq Acc Id: NM_001277353   ⟹   NP_001264282
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
HuRef4137,094,997 - 137,149,992 (-)NCBI
CHM1_14141,341,868 - 141,396,867 (-)NCBI
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531650   ⟹   XP_011529952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531651   ⟹   XP_011529953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,497,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531652   ⟹   XP_011529954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531653   ⟹   XP_011529955
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531654   ⟹   XP_011529956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531656   ⟹   XP_011529958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531657   ⟹   XP_011529959
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,486,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531658   ⟹   XP_011529960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531659   ⟹   XP_011529961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,456,632 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531661   ⟹   XP_011529963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,456,633 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531662   ⟹   XP_011529964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,456,644 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531664   ⟹   XP_011529966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,497,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011531665   ⟹   XP_011529967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,498,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047449648   ⟹   XP_047305604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,442,262 - 140,482,403 (-)NCBI
RefSeq Acc Id: XM_054349000   ⟹   XP_054204975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349001   ⟹   XP_054204976
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,817,616 (-)NCBI
RefSeq Acc Id: XM_054349002   ⟹   XP_054204977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349003   ⟹   XP_054204978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349004   ⟹   XP_054204979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349005   ⟹   XP_054204980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349006   ⟹   XP_054204981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,806,597 (-)NCBI
RefSeq Acc Id: XM_054349007   ⟹   XP_054204982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349008   ⟹   XP_054204983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,776,364 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349009   ⟹   XP_054204984
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,776,391 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349010   ⟹   XP_054204985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,776,402 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349011   ⟹   XP_054204986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,817,611 (-)NCBI
RefSeq Acc Id: XM_054349012   ⟹   XP_054204987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,818,003 (-)NCBI
RefSeq Acc Id: XM_054349013   ⟹   XP_054204988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,762,026 - 143,802,119 (-)NCBI
RefSeq Acc Id: XR_008486929
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,771,175 - 143,818,003 (-)NCBI
RefSeq Acc Id: XR_008486930
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04143,781,670 - 143,818,003 (-)NCBI
RefSeq Acc Id: XR_938697
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384140,456,632 - 140,498,293 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001264282 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529952 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529953 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529954 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529955 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529956 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529958 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529959 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529960 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529961 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529963 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529964 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529966 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529967 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305604 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204975 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204976 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204977 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204978 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204979 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204980 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204981 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204982 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204983 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204984 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204985 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204986 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204987 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204988 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A6NG13 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000421185
  ENSP00000421185.1
  ENSP00000422714.1
  ENSP00000423767.1
  ENSP00000423768.1
  ENSP00000425945.1
  ENSP00000426225.2
RefSeq Acc Id: NP_001264282   ⟸   NM_001277353
- Peptide Label: precursor
- UniProtKB: A6NG13 (UniProtKB/Swiss-Prot),   D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529958   ⟸   XM_011531656
- Peptide Label: isoform X4
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529956   ⟸   XM_011531654
- Peptide Label: isoform X3
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529952   ⟸   XM_011531650
- Peptide Label: isoform X1
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529960   ⟸   XM_011531658
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011529967   ⟸   XM_011531665
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011529955   ⟸   XM_011531653
- Peptide Label: isoform X2
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529954   ⟸   XM_011531652
- Peptide Label: isoform X2
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529953   ⟸   XM_011531651
- Peptide Label: isoform X2
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529966   ⟸   XM_011531664
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011529959   ⟸   XM_011531657
- Peptide Label: isoform X5
- UniProtKB: D6RH02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529961   ⟸   XM_011531659
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011529963   ⟸   XM_011531661
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011529964   ⟸   XM_011531662
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSP00000426225   ⟸   ENST00000503109
Ensembl Acc Id: ENSP00000421185   ⟸   ENST00000511113
Ensembl Acc Id: ENSP00000422714   ⟸   ENST00000513018
Ensembl Acc Id: ENSP00000425945   ⟸   ENST00000515121
Ensembl Acc Id: ENSP00000423768   ⟸   ENST00000515402
Ensembl Acc Id: ENSP00000423767   ⟸   ENST00000515354
RefSeq Acc Id: XP_047305604   ⟸   XM_047449648
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054204987   ⟸   XM_054349012
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054204982   ⟸   XM_054349007
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054204980   ⟸   XM_054349005
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054204979   ⟸   XM_054349004
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054204975   ⟸   XM_054349000
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054204978   ⟸   XM_054349003
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054204977   ⟸   XM_054349002
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054204976   ⟸   XM_054349001
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054204986   ⟸   XM_054349011
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054204981   ⟸   XM_054349006
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054204988   ⟸   XM_054349013
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054204983   ⟸   XM_054349008
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054204984   ⟸   XM_054349009
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054204985   ⟸   XM_054349010
- Peptide Label: isoform X9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6NG13-F1-model_v2 AlphaFold A6NG13 1-374 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:43619 AgrOrtholog
COSMIC MGAT4D COSMIC
Ensembl Genes ENSG00000205301 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000503109.6 UniProtKB/TrEMBL
  ENST00000511113 ENTREZGENE
  ENST00000511113.6 UniProtKB/Swiss-Prot
  ENST00000513018.5 UniProtKB/TrEMBL
  ENST00000515121.5 UniProtKB/TrEMBL
  ENST00000515354.5 UniProtKB/TrEMBL
  ENST00000515402.1 UniProtKB/TrEMBL
GTEx ENSG00000205301 GTEx
HGNC ID HGNC:43619 ENTREZGENE
Human Proteome Map MGAT4D Human Proteome Map
InterPro Glyco_transf_54 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:152586 UniProtKB/Swiss-Prot
NCBI Gene 152586 ENTREZGENE
OMIM 610310 OMIM
PANTHER ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE-LIKE PROTEIN MGAT4D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_54 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA166123703 PharmGKB
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A6NG13 ENTREZGENE
  D6RCD2_HUMAN UniProtKB/TrEMBL
  D6RCD3_HUMAN UniProtKB/TrEMBL
  D6RH02 ENTREZGENE, UniProtKB/TrEMBL
  D6RIE7_HUMAN UniProtKB/TrEMBL
  H0Y908_HUMAN UniProtKB/TrEMBL
  MGT4D_HUMAN UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 MGAT4D  MGAT4 family member D    MGAT4 family, member D  Symbol and/or name change 5135510 APPROVED
2014-07-23 MGAT4D  MGAT4 family, member D  LOC152586  glycosyltransferase 54 domain-containing protein  Symbol and/or name change 5135510 APPROVED
2011-07-27 LOC152586  glycosyltransferase 54 domain-containing protein  LOC152586  similar to RIKEN cDNA 4933434I20  Symbol and/or name change 5135510 APPROVED