KRT18P38 (keratin 18 pseudogene 38) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: KRT18P38 (keratin 18 pseudogene 38) Homo sapiens
Analyze
Symbol: KRT18P38
Name: keratin 18 pseudogene 38
RGD ID: 1605774
HGNC Page HGNC:33407
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: KRT18  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38619,612,688 - 19,614,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl619,612,755 - 19,614,036 (+)EnsemblGRCh38hg38GRCh38
GRCh37619,612,919 - 19,614,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36619,647,026 - 19,722,245 (+)NCBINCBI36Build 36hg18NCBI36
Celera620,851,043 - 20,852,445 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef619,558,567 - 19,559,969 (+)NCBIHuRef
CHM1_1619,615,571 - 19,616,973 (+)NCBICHM1_1
T2T-CHM13v2.0619,484,320 - 19,485,722 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:82
Interacting mature miRNAs:82
Transcripts:ENST00000449496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D6S1946  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,568,697 - 19,568,997UniSTSGRCh37
Build 36619,676,676 - 19,676,976RGDNCBI36
Celera620,806,821 - 20,807,121RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,514,323 - 19,514,623UniSTS
Whitehead-YAC Contig Map6 UniSTS
SHGC-85053  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,550,725 - 19,551,001UniSTSGRCh37
Build 36619,658,704 - 19,658,980RGDNCBI36
Celera620,788,836 - 20,789,112RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,496,320 - 19,496,596UniSTS
TNG Radiation Hybrid Map611038.0UniSTS
SHGC-81801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,609,083 - 19,609,426UniSTSGRCh37
Build 36619,717,062 - 19,717,405RGDNCBI36
Celera620,847,207 - 20,847,550RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,554,731 - 19,555,074UniSTS
TNG Radiation Hybrid Map611062.0UniSTS
TNG Radiation Hybrid Map611058.0UniSTS
RH37428  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,560,513 - 19,560,687UniSTSGRCh37
Build 36619,668,492 - 19,668,666RGDNCBI36
Celera620,798,633 - 20,798,807RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,506,116 - 19,506,290UniSTS
GeneMap99-GB4 RH Map679.76UniSTS
G17063  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,549,467 - 19,549,687UniSTSGRCh37
Build 36619,657,446 - 19,657,666RGDNCBI36
Celera620,787,578 - 20,787,798RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,495,063 - 19,495,283UniSTS
HSC236_(EPM2B-5)  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37619,549,181 - 19,549,388UniSTSGRCh37
Build 36619,657,160 - 19,657,367RGDNCBI36
Celera620,787,291 - 20,787,499RGD
Cytogenetic Map6p22.3UniSTS
HuRef619,494,767 - 19,494,984UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 10 1 3 1 1 2 10 21 2
Below cutoff 648 338 813 253 170 158 609 166 450 133 518 852 100 267 395 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000449496
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl619,612,755 - 19,614,036 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRT18P38 COSMIC
Ensembl Genes ENSG00000214012 Ensembl, ENTREZGENE
GTEx ENSG00000214012 GTEx
HGNC ID HGNC:33407 ENTREZGENE
Human Proteome Map KRT18P38 Human Proteome Map
NCBI Gene 441133 ENTREZGENE