CDY11P (chromodomain Y-linked 11 pseudogene) - Rat Genome Database

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Gene: CDY11P (chromodomain Y-linked 11 pseudogene) Homo sapiens
Analyze
Symbol: CDY11P
Name: chromodomain Y-linked 11 pseudogene (Ensembl:chromodomain protein Y-linked 11 pseudogene)
RGD ID: 1604155
HGNC Page HGNC:23852
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: chromodomain protein Y-linked 11 pseudogene; chromodomain protein, Y-linked 11 pseudogene
Related Functional Gene: CDY1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y21,696,145 - 21,699,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY21,696,570 - 21,698,220 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y23,858,031 - 23,861,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y22,267,419 - 22,270,447 (+)NCBINCBI36Build 36hg18NCBI36
CeleraY8,530,305 - 8,532,268 (+)NCBICelera
Cytogenetic MapYq11.223NCBI
T2T-CHM13v2.0Y22,571,635 - 22,574,663 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:204
Interacting mature miRNAs:207
Transcripts:ENST00000447168
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DYF77S1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y23,858,423 - 23,858,566UniSTSGRCh37
GRCh37Y9,005,201 - 9,005,344UniSTSGRCh37
CeleraY8,530,626 - 8,530,769UniSTS
CeleraY237,601 - 237,744RGD
Cytogenetic MapYq11.223UniSTS
Cytogenetic MapYp11.2UniSTS
HuRefY6,546,064 - 6,546,207UniSTS
HuRefY17,408,317 - 17,408,460UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low
Below cutoff 94 8 3 2 34 14 5 25 1 19 11 2 2 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447168
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY21,696,570 - 21,698,220 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CDY11P COSMIC
Ensembl Genes ENSG00000230029 Ensembl
GTEx ENSG00000230029 GTEx
HGNC ID HGNC:23852 ENTREZGENE
Human Proteome Map CDY11P Human Proteome Map
NCBI Gene 378014 ENTREZGENE
PharmGKB PA134973775 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-28 CDY11P  chromodomain Y-linked 11 pseudogene  CDY11P  chromodomain protein Y-linked 11 pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2016-07-19 CDY11P  chromodomain protein Y-linked 11 pseudogene    chromodomain protein, Y-linked 11 pseudogene  Symbol and/or name change 5135510 APPROVED