TRBV7-5 (T cell receptor beta variable 7-5 (pseudogene)) - Rat Genome Database

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Gene: TRBV7-5 (T cell receptor beta variable 7-5 (pseudogene)) Homo sapiens
Analyze
Symbol: TRBV7-5
Name: T cell receptor beta variable 7-5 (pseudogene)
RGD ID: 1603647
HGNC Page HGNC:12239
Description:
Type: pseudo (Ensembl: TR_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: TCRBV6S9P; TCRBV7S5; TRBV75
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,474,096 - 142,474,567 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,474,096 - 142,474,567 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,157,378 - 142,157,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367141,842,568 - 141,843,039 (+)NCBINCBI36Build 36hg18NCBI36
Celera7136,973,047 - 136,973,518 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,490,176 - 136,490,647 (+)NCBIHuRef
CHM1_17142,108,068 - 142,108,539 (+)NCBICHM1_1
T2T-CHM13v2.07143,810,840 - 143,811,311 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,534,298 - 141,534,769 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8420835   PMID:8650574  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:159
Interacting mature miRNAs:159
Transcripts:ENST00000390382
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 12 350 20 1 435 1 4 3 29 4 30 70 1 1
Below cutoff 225 376 204 54 558 29 211 53 485 38 172 325 25 115 106 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390382
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7142,474,096 - 142,474,567 (+)Ensembl
Protein Sequences
GenBank Protein AAA61264 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC TRBV7-5 COSMIC
Ensembl Genes ENSG00000227550 Ensembl, ENTREZGENE
GTEx ENSG00000227550 GTEx
HGNC ID HGNC:12239 ENTREZGENE
Human Proteome Map TRBV7-5 Human Proteome Map
NCBI Gene 28593 ENTREZGENE
PharmGKB PA36919 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 TRBV7-5  T cell receptor beta variable 7-5 (pseudogene)  TRBV7-5  T cell receptor beta variable 7-5 pseudogene  Symbol and/or name change 5135510 APPROVED