KRTAP19-11P (keratin associated protein 19-11, pseudogene) - Rat Genome Database

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Gene: KRTAP19-11P (keratin associated protein 19-11, pseudogene) Homo sapiens
Analyze
Symbol: KRTAP19-11P
Name: keratin associated protein 19-11, pseudogene
RGD ID: 1603503
HGNC Page HGNC:18952
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KAP19C; KRTAP19P3
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,537,178 - 30,537,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,537,278 - 30,537,381 (-)EnsemblGRCh38hg38GRCh38
GRCh372131,909,497 - 31,909,727 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362130,831,268 - 30,831,698 (-)NCBINCBI36Build 36hg18NCBI36
Celera2117,092,638 - 17,092,870 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2117,318,516 - 17,318,748 (-)NCBIHuRef
CHM1_12131,471,228 - 31,471,460 (-)NCBICHM1_1
T2T-CHM13v2.02128,903,134 - 28,903,366 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12359730  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:104
Interacting mature miRNAs:104
Transcripts:ENST00000439851
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 3 1 2 1 5 1
Below cutoff 1 2 1 3 3 7 1 8 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439851
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2130,537,278 - 30,537,381 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRTAP19-11P COSMIC
Ensembl Genes ENSG00000236612 Ensembl
GTEx ENSG00000236612 GTEx
HGNC ID HGNC:18952 ENTREZGENE
Human Proteome Map KRTAP19-11P Human Proteome Map
NCBI Gene 337984 ENTREZGENE
PharmGKB PA134879670 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 KRTAP19-11P  keratin associated protein 19-11, pseudogene  KRTAP19P3  keratin associated protein 19 pseudogene 3  Symbol and/or name change 5135510 APPROVED