THA1P (threonine aldolase 1, pseudogene) - Rat Genome Database

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Gene: THA1P (threonine aldolase 1, pseudogene) Homo sapiens
Analyze
Symbol: THA1P
Name: threonine aldolase 1, pseudogene
RGD ID: 1602161
HGNC Page HGNC:18004
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 4,4'-sulfonyldiphenol (ortholog); benzo[a]pyrene (ortholog)
Type: pseudo (Ensembl: unitary_pseudogene)
RefSeq Status: INFERRED
Previously known as: GLY1
RGD Orthologs
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,248,590 - 78,256,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,248,493 - 78,254,416 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,244,671 - 76,252,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,756,169 - 73,762,092 (-)NCBINCBI36Build 36hg18NCBI36
Celera1772,840,698 - 72,848,293 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,668,791 - 71,676,394 (-)NCBIHuRef
CHM1_11776,309,208 - 76,316,803 (-)NCBICHM1_1
T2T-CHM13v2.01779,142,679 - 79,150,294 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15146197   PMID:15757516   PMID:16344560   PMID:20210993  


Genomics

Comparative Map Data
THA1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,248,590 - 78,256,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,248,493 - 78,254,416 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,244,671 - 76,252,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,756,169 - 73,762,092 (-)NCBINCBI36Build 36hg18NCBI36
Celera1772,840,698 - 72,848,293 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,668,791 - 71,676,394 (-)NCBIHuRef
CHM1_11776,309,208 - 76,316,803 (-)NCBICHM1_1
T2T-CHM13v2.01779,142,679 - 79,150,294 (-)NCBIT2T-CHM13v2.0
Tha1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,758,775 - 117,764,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,758,778 - 117,764,307 (-)EnsemblGRCm39 Ensembl
GRCm3811117,867,949 - 117,873,526 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,867,952 - 117,873,481 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711117,729,263 - 117,734,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,684,041 - 117,689,571 (-)NCBIMGSCv36mm8
Celera11129,613,184 - 129,618,761 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
Tha1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,593,363 - 103,598,851 (-)NCBIGRCr8
mRatBN7.210103,094,681 - 103,100,169 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,094,681 - 103,100,519 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,877,585 - 106,883,706 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,878,085 - 106,883,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,516,263 - 106,521,770 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,654,626 - 101,660,806 (-)NCBICelera
Cytogenetic Map10q32.2NCBI

Variants

.
Variants in THA1P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:398
Count of miRNA genes:344
Interacting mature miRNAs:379
Transcripts:ENST00000590384
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 70 22 452 21 145 17 155 53 487 79 226 514 6 183 28 1
Below cutoff 1769 1517 1013 400 957 285 2647 1451 2845 286 966 935 123 858 1640 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000590384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,248,493 - 78,254,416 (-)Ensembl
RefSeq Acc Id: XM_001127683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361773,756,169 - 73,762,092 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18004 AgrOrtholog
COSMIC THA1P COSMIC
Ensembl Genes ENSG00000267676 Ensembl
GTEx ENSG00000267676 GTEx
HGNC ID HGNC:18004 ENTREZGENE
Human Proteome Map THA1P Human Proteome Map
NCBI Gene 390816 ENTREZGENE
PharmGKB PA142670817 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 THA1P  threonine aldolase 1, pseudogene  THA1P  threonine aldolase 1 pseudogene  Symbol and/or name change 5135510 APPROVED