Rpl11-ps10 (ribosomal protein L11, pseudogene 10) - Rat Genome Database

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Gene: Rpl11-ps10 (ribosomal protein L11, pseudogene 10) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl11-ps10
Name: ribosomal protein L11, pseudogene 10
RGD ID: 1592266
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AABR07064667.1; LOC689496; similar to 60S ribosomal protein L11
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8691,948,614 - 91,956,169 (-)NCBIGRCr8
mRatBN7.2686,212,462 - 86,220,022 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl686,212,462 - 86,212,971 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0689,932,659 - 89,940,211 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl689,932,659 - 89,933,168 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0699,399,798 - 99,407,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4689,632,504 - 89,641,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera684,737,912 - 84,745,469 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IBA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005511   ⟹   ENSRNOP00000005511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl686,212,462 - 86,212,971 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000005511.3
Ensembl Acc Id: ENSRNOP00000005511   ⟸   ENSRNOT00000005511
Protein Domains
Large ribosomal subunit protein uL5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVT8-F1-model_v2 AlphaFold F1LVT8 1-169 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592266 AgrOrtholog
BioCyc Gene G2FUF-37280 BioCyc
Ensembl Genes ENSRNOG00000004163 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005511.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L5 UniProtKB/TrEMBL
  Ribosomal_L5_dom_sf UniProtKB/TrEMBL
  Ribosomal_L5_N UniProtKB/TrEMBL
NCBI Gene 689496 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L11 UniProtKB/TrEMBL
  PTHR11994 UniProtKB/TrEMBL
Pfam Ribosomal_L5 UniProtKB/TrEMBL
PhenoGen Rpl11-ps10 PhenoGen
PIRSF Ribosomal_L5 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004163 RatGTEx
Superfamily-SCOP SSF55282 UniProtKB/TrEMBL
UniProt F1LVT8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl11-ps10  ribosomal protein L11, pseudogene 10  LOC689496  similar to 60S ribosomal protein L11  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC689496  similar to 60S ribosomal protein L11  AABR07064667.1    Data merged from RGD:15003275 737654 PROVISIONAL
2019-11-08 AABR07064667.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-01-09 LOC689496  similar to 60S ribosomal protein L11  LOC687811  similar to 60S ribosomal protein L11  Data merged from RGD:1596292 1643240 APPROVED
2006-11-20 LOC689496  similar to 60S ribosomal protein L11      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC687811  similar to 60S ribosomal protein L11      Symbol and Name status set to provisional 70820 PROVISIONAL