Fxc1-ps1 (fractured callus expressed transcript 1, pseudogene 1) - Rat Genome Database

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Gene: Fxc1-ps1 (fractured callus expressed transcript 1, pseudogene 1) Rattus norvegicus
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Symbol: Fxc1-ps1
Name: fractured callus expressed transcript 1, pseudogene 1
RGD ID: 1587645
Description: INTERACTS WITH ammonium chloride; indole-3-methanol
Type: pseudo
RefSeq Status: MODEL
Previously known as: Fxc1p; LOC688534; similar to Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1); Tim10bp
Related Functional Gene: Timm10b  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,630,443 - 48,631,120 (-)NCBIGRCr8
mRatBN7.22047,048,327 - 47,049,191 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.02048,309,610 - 48,310,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02049,963,390 - 49,964,010 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,476,666 - 47,476,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2052,938,871 - 52,939,955 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fxc1-ps1Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of FXC1-PS1 mRNACTDPMID:16483693
Fxc1-ps1Ratindole-3-methanol affects expressionEXP 6480464indole-3-carbinol affects the expression of FXC1-PS1 mRNACTDPMID:21396975


#
Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Fxc1-ps1
5 total Variants

1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat

1 to 10 of 11 rows





RefSeq Transcripts XR_597456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_599500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_597456
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02048,309,610 - 48,310,694 (-)NCBI
RefSeq Acc Id: XR_599500
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2052,938,871 - 52,939,955 (+)NCBI


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-3340 BioCyc
NCBI Gene 688534 ENTREZGENE
PhenoGen Fxc1-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-08 Fxc1-ps1  fractured callus expressed transcript 1, pseudogene 1  LOC688534  similar to Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-17 LOC688534  similar to Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1)  LOC683886  similar to Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1)  Data merged from RGD:1597794 1643240 APPROVED
2006-11-20 LOC683886  similar to Mitochondrial import inner membrane translocase subunit Tim9 B (TIMM10B) (Tim10b) (Fracture callus protein 1) (FxC1)      Symbol and Name status set to provisional 70820 PROVISIONAL