Prima1 (proline rich membrane anchor 1) - Rat Genome Database

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Gene: Prima1 (proline rich membrane anchor 1) Rattus norvegicus
Analyze
Symbol: Prima1
Name: proline rich membrane anchor 1
RGD ID: 1583978
Description: Predicted to enable enzyme binding activity and protein-membrane adaptor activity. Predicted to act upstream of or within establishment of localization in cell. Located in membrane raft. Orthologous to human PRIMA1 (proline rich membrane anchor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362773; LOC690195; PRiMA; Prima1l; proline rich membrane anchor 1-like; proline-rich membrane anchor 1; similar to proline rich membrane anchor 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,094,686 - 128,155,592 (-)NCBIGRCr8
mRatBN7.26122,338,365 - 122,390,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,338,370 - 122,389,921 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,479,287 - 122,530,808 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06122,774,553 - 122,826,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,109,406 - 122,160,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,075,954 - 127,127,985 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,075,954 - 127,127,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,279,361 - 136,331,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,473,126 - 127,524,588 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,479,410 - 127,528,755 (-)NCBI
Celera6119,819,984 - 119,871,375 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prima1Ratachondrogenesis type IA  ISOPRIMA1 (Homo sapiens)8554872ClinVar Annotator: match by term: Achondrogenesis and type IAClinVarPMID:28492532
Prima1Ratautosomal dominant nocturnal frontal lobe epilepsy  ISOPRIMA1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
Prima1RatDICER1 syndrome  ISOPRIMA1 (Homo sapiens)8554872ClinVar Annotator: match by term: DICER1 syndromeClinVarPMID:26545620 more ...
Prima1Ratpleuropulmonary blastoma  ISOPRIMA1 (Homo sapiens)8554872ClinVar Annotator: match by term: DICER1-related pleuropulmonary blastoma cancer predisposition syndromeClinVarPMID:26545620 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prima1Ratmuscular dystrophy  ISOPRIMA1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22906800

1 to 20 of 68 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prima1Rat17alpha-ethynylestradiol decreases expressionISOPRIMA1 (Homo sapiens)6480464Ethinyl Estradiol results in decreased expression of PRIMA1 mRNACTDPMID:18936297
Prima1Rat17alpha-ethynylestradiol affects expressionISOPRIMA1 (Homo sapiens)6480464Ethinyl Estradiol affects the expression of PRIMA1 mRNACTDPMID:20170705 and PMID:26865667
Prima1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PRIMA1 mRNACTDPMID:32109520
Prima1Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of PRIMA1 mRNACTDPMID:28522335
Prima1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of PRIMA1 mRNACTDPMID:24780913
Prima1Rataristolochic acid A decreases expressionISOPRIMA1 (Homo sapiens)6480464aristolochic acid I results in decreased expression of PRIMA1 mRNACTDPMID:33212167
Prima1Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of PRIMA1 geneCTDPMID:35440735
Prima1Ratbaicalin increases expressionEXP 6480464baicalin results in increased expression of PRIMA1 mRNACTDPMID:27019979
Prima1Ratbelinostat decreases expressionISOPRIMA1 (Homo sapiens)6480464belinostat results in decreased expression of PRIMA1 mRNACTDPMID:27188386
Prima1Ratbenzo[a]pyrene increases expressionISOPrima1 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of PRIMA1 mRNACTDPMID:27195522
Prima1Ratbenzo[a]pyrene increases methylationISOPRIMA1 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of PRIMA1 promoterCTDPMID:27901495
Prima1Ratbenzo[a]pyrene decreases expressionISOPRIMA1 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of PRIMA1 mRNACTDPMID:20106945 and PMID:21632981
Prima1Ratbis(2-ethylhexyl) phthalate decreases expressionISOPRIMA1 (Homo sapiens)6480464Diethylhexyl Phthalate results in decreased expression of PRIMA1 mRNACTDPMID:31163220
Prima1Ratbis(2-ethylhexyl) phthalate multiple interactionsEXP 6480464[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of PRIMA1 mRNACTDPMID:31199487
Prima1Ratbisphenol A affects expressionISOPRIMA1 (Homo sapiens)6480464bisphenol A affects the expression of PRIMA1 mRNACTDPMID:20170705
Prima1Ratbisphenol A increases methylationEXP 6480464bisphenol A results in increased methylation of PRIMA1 geneCTDPMID:28505145
Prima1Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of PRIMA1 mRNACTDPMID:30816183
Prima1Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of PRIMA1 mRNACTDPMID:25181051
Prima1Ratbisphenol F decreases expressionISOPrima1 (Mus musculus)6480464bisphenol F results in decreased expression of PRIMA1 mRNACTDPMID:30951980
Prima1Ratbromobenzene decreases expressionEXP 6480464bromobenzene results in decreased expression of PRIMA1 mRNACTDPMID:32479839

1 to 20 of 68 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prima1Ratestablishment of localization in cell acts_upstream_of_or_withinISOPrima1 (Mus musculus)1624291 PMID:11804574RGDPMID:11804574

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prima1Ratanchoring junction located_inIEAUniProtKB-SubCell:SL-00381600115GO_REF:0000044UniProtGO_REF:0000044
Prima1Ratanchoring junction located_inIEAUniProtKB-KW:KW-09651600115GO_REF:0000043UniProtGO_REF:0000043
Prima1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Prima1Ratmembrane raft  IDA 405855864MMO:0000679 RGD 
Prima1Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Prima1Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Prima1Ratplasma membrane located_inISOPrima1 (Mus musculus)1624291 PMID:11804574RGDPMID:11804574
Prima1Ratsynapse located_inIEAUniProtKB-SubCell:SL-02581600115GO_REF:0000044UniProtGO_REF:0000044
Prima1Ratsynapse located_inIEAUniProtKB-KW:KW-07701600115GO_REF:0000043UniProtGO_REF:0000043
1 to 9 of 9 rows

Molecular Function

  


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Targeting acetylcholinesterase to membrane rafts: a function mediated by the proline-rich membrane anchor (PRiMA) in neurons. Xie HQ, etal., J Biol Chem. 2010 Apr 9;285(15):11537-46. doi: 10.1074/jbc.M109.038711. Epub 2010 Feb 10.
PMID:11804574   PMID:15632090   PMID:18511416   PMID:19368807   PMID:19490106   PMID:19680821  



Prima1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,094,686 - 128,155,592 (-)NCBIGRCr8
mRatBN7.26122,338,365 - 122,390,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,338,370 - 122,389,921 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,479,287 - 122,530,808 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06122,774,553 - 122,826,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,109,406 - 122,160,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,075,954 - 127,127,985 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,075,954 - 127,127,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,279,361 - 136,331,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,473,126 - 127,524,588 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,479,410 - 127,528,755 (-)NCBI
Celera6119,819,984 - 119,871,375 (-)NCBICelera
Cytogenetic Map6q32NCBI
PRIMA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381493,718,298 - 93,788,994 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1493,718,298 - 93,788,485 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,184,644 - 94,254,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,254,397 - 93,324,519 (-)NCBINCBI36Build 36hg18NCBI36
Build 341493,257,136 - 93,324,519NCBI
Celera1474,238,652 - 74,308,549 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1474,364,500 - 74,434,354 (-)NCBIHuRef
CHM1_11494,122,661 - 94,192,768 (-)NCBICHM1_1
T2T-CHM13v2.01487,945,588 - 88,016,460 (-)NCBIT2T-CHM13v2.0
Prima1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,160,712 - 103,208,967 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,163,167 - 103,208,409 (-)EnsemblGRCm39 Ensembl
GRCm3812103,194,453 - 103,242,719 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,196,908 - 103,242,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,435,118 - 104,480,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,597,958 - 103,643,196 (-)NCBIMGSCv36mm8
Celera12104,413,731 - 104,459,201 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.9NCBI
Prima1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543815,835,641 - 15,903,484 (-)NCBIChiLan1.0ChiLan1.0
PRIMA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21594,876,351 - 94,947,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,092,856 - 94,163,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,351,140 - 74,422,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11493,685,784 - 93,756,139 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1493,685,784 - 93,756,139 (-)Ensemblpanpan1.1panPan2
PRIMA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,843,314 - 62,903,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,843,300 - 62,903,444 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,420,228 - 62,480,175 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,114,510 - 63,174,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,114,499 - 63,175,090 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,792,703 - 62,852,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,843,588 - 62,903,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,173,899 - 63,233,935 (-)NCBIUU_Cfam_GSD_1.0
Prima1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864011,753,509 - 11,799,860 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,670,004 - 1,712,558 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,667,191 - 1,713,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRIMA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,038,630 - 115,100,756 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,038,626 - 115,101,431 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27121,670,412 - 121,710,761 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRIMA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12471,466,023 - 71,540,482 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605358,711,841 - 58,783,437 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prima1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473410,167,449 - 10,222,792 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473410,167,407 - 10,223,052 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Prima1
303 total Variants

Predicted Target Of
Summary Value
Count of predictions:1143
Count of miRNA genes:332
Interacting mature miRNAs:442
Transcripts:ENSRNOT00000011906, ENSRNOT00000051429
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat

1 to 10 of 23 rows
D6Hmgc14  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86128,144,788 - 128,145,006 (+)Marker Load Pipeline
mRatBN7.26122,379,987 - 122,380,207 (+)MAPPERmRatBN7.2
Rnor_6.06127,117,566 - 127,117,783NCBIRnor6.0
Rnor_5.06136,320,973 - 136,321,190UniSTSRnor5.0
Celera6119,861,539 - 119,861,748UniSTS
Cytogenetic Map6q32UniSTS
RH132423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26122,385,260 - 122,385,479 (+)MAPPERmRatBN7.2
Rnor_6.06127,122,839 - 127,123,057NCBIRnor6.0
Rnor_5.06136,326,296 - 136,326,514UniSTSRnor5.0
RGSC_v3.46127,520,014 - 127,520,232UniSTSRGSC3.4
Celera6119,866,801 - 119,867,019UniSTS
RH 3.4 Map6841.89UniSTS
Cytogenetic Map6q32UniSTS
RH134181  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86128,103,228 - 128,103,420 (+)Marker Load Pipeline
mRatBN7.26122,338,423 - 122,338,615 (+)MAPPERmRatBN7.2
Rnor_6.06127,076,008 - 127,076,199NCBIRnor6.0
Rnor_5.06136,279,415 - 136,279,606UniSTSRnor5.0
RGSC_v3.46127,473,180 - 127,473,371UniSTSRGSC3.4
Celera6119,819,999 - 119,820,192UniSTS
RH 3.4 Map6841.89UniSTS
Cytogenetic Map6q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000011906   ⟹   ENSRNOP00000011906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6122,338,370 - 122,389,921 (-)Ensembl
Rnor_6.0 Ensembl6127,075,954 - 127,127,413 (-)Ensembl
RefSeq Acc Id: NM_001108721   ⟹   NP_001102191
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,103,175 - 128,154,636 (-)NCBI
mRatBN7.26122,338,370 - 122,389,835 (-)NCBI
Rnor_6.06127,075,954 - 127,127,413 (-)NCBI
Rnor_5.06136,279,361 - 136,331,457 (-)NCBI
RGSC_v3.46127,473,126 - 127,524,588 (-)RGD
Celera6119,819,984 - 119,871,375 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240495   ⟹   XP_006240557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,094,686 - 128,155,592 (-)NCBI
mRatBN7.26122,338,365 - 122,390,955 (-)NCBI
Rnor_6.06127,075,954 - 127,127,985 (-)NCBI
Rnor_5.06136,279,361 - 136,331,457 (-)NCBI
Sequence:
Protein RefSeqs NP_001102191 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240557 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZZP4 (Get FASTA)   NCBI Sequence Viewer  
  EDL81765 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102191   ⟸   NM_001108721
- Peptide Label: precursor
- UniProtKB: D4ACH8 (UniProtKB/Swiss-Prot),   D3ZZP4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006240557   ⟸   XM_006240495
- Peptide Label: isoform X1
- UniProtKB: D4ACH8 (UniProtKB/Swiss-Prot),   D3ZZP4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011906   ⟸   ENSRNOT00000011906
PRAD

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZP4-F1-model_v2 AlphaFold D3ZZP4 1-153 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694791
Promoter ID:EPDNEW_R5314
Type:single initiation site
Name:Prima1_1
Description:proline rich membrane anchor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06127,127,419 - 127,127,479EPDNEW


1 to 13 of 13 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-36425 BioCyc
Ensembl Genes ENSRNOG00000008915 Ensembl
InterPro PRIMA1 UniProtKB/Swiss-Prot
KEGG Report rno:690195 UniProtKB/Swiss-Prot
NCBI Gene 690195 ENTREZGENE
Pfam PRIMA1 UniProtKB/Swiss-Prot
PhenoGen Prima1 PhenoGen
RatGTEx ENSRNOG00000008915 RatGTEx
UniProt A0A8L2Q5U1_RAT UniProtKB/TrEMBL
  D3ZZP4 ENTREZGENE
  D4ACH8 ENTREZGENE
  PRIMA_RAT UniProtKB/Swiss-Prot
UniProt Secondary D4ACH8 UniProtKB/Swiss-Prot
1 to 13 of 13 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-22 Prima1  proline rich membrane anchor 1  Prima1l  proline rich membrane anchor 1-like  Data merged from RGD:1306833 737654 APPROVED
2008-04-30 Prima1l  proline rich membrane anchor 1-like  Prima1_predicted  proline rich membrane anchor 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Prima1  proline rich membrane anchor 1  LOC690195  similar to proline rich membrane anchor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690195  similar to proline rich membrane anchor 1  LOC683544  similar to proline rich membrane anchor 1  Data merged from RGD:1585650 1643240 APPROVED
2006-11-19 LOC690195  similar to proline rich membrane anchor 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683544  similar to proline rich membrane anchor 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Prima1_predicted  proline rich membrane anchor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED