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Gene: Pnma5 (PNMA family member 5) Rattus norvegicus

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Symbol:

Pnma5

Name:

PNMA family member 5

RGD ID:

1565857

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in meiosis I. Predicted to be located in nucleus. Predicted to be active in cell cortex and meiotic spindle. Orthologous to human PNMA5 (PNMA family member 5); INTERACTS WITH bisphenol A; C60 fullerene; aflatoxin B1 (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC309266; paraneoplastic antigen like 5; paraneoplastic antigen-like protein 5; paraneoplastic Ma antigen family member 5; RGD1565857; similar to paraneoplastic antigen like 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PNMA5 (PNMA family member 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Pnma5 (paraneoplastic antigen family 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PNMA5 (PNMA family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pnma5 (PNMA family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PNMA5 (PNMA family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PNMA5 (PNMA family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TAP1 (transporter 1, ATP binding cassette subfamily B member)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PNMA5 (PNMA family member 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pnma5 (paraneoplastic antigen family 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	155,923,131 - 155,925,055 (-)	NCBI		GRCr8
mRatBN7.2	X	150,880,865 - 150,882,789 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	150,880,865 - 150,882,789 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,072,910 - 153,074,834 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,605,250 - 156,607,174 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,148,364 - 154,150,288 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	153,037,448 - 153,039,372 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	153,037,448 - 153,039,372 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	148,767,026 - 148,768,950 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,030,480 - 159,032,404 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	131,845,146 - 131,847,070 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pnma5	Rat	adrenoleukodystrophy		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Adrenoleukodystrophy	ClinVar	PMID:10480214 more ...
Pnma5	Rat	autistic disorder		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Pnma5	Rat	autosomal hemophilia A		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA A	ClinVar	PMID:31690835
Pnma5	Rat	Barth syndrome		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: 3-Methylglutaconic aciduria type 2	ClinVar	PMID:10480214 more ...
Pnma5	Rat	cerebral creatine deficiency syndrome 1		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Creatine transporter deficiency	ClinVar	PMID:10480214 more ...
Pnma5	Rat	dyskeratosis congenita		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dyskeratosis congenita	ClinVar	PMID:18177777 and PMID:28492532
Pnma5	Rat	Emery-Dreifuss muscular dystrophy		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: X-linked Emery-Dreifuss muscular dystrophy	ClinVar	PMID:10480214 more ...
Pnma5	Rat	factor VIII deficiency		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor 8 deficiency and congenital	ClinVar	PMID:31690835
Pnma5	Rat	favism		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anemia more ...	ClinVar	PMID:18177777 and PMID:28492532
Pnma5	Rat	paraplegia		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spastic paraplegia	ClinVar	PMID:10480214 more ...
Pnma5	Rat	periventricular nodular heterotopia		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Heterotopia more ...	ClinVar	PMID:10480214 more ...
Pnma5	Rat	syndromic X-linked intellectual disability Lubs type		ISO	PNMA5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs type	ClinVar	PMID:22679399 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pnma5	Rat	aflatoxin B1	decreases expression	ISO	PNMA5 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of PNMA5 mRNA	CTD	PMID:22100608
Pnma5	Rat	benzo[a]pyrene	decreases methylation	ISO	PNMA5 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of PNMA5 5' UTR	CTD	PMID:27901495
Pnma5	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Pnma5 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of PNMA5 mRNA	CTD	PMID:34319233
Pnma5	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PNMA5 mRNA	CTD	PMID:25181051
Pnma5	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of PNMA5 gene	CTD	PMID:28505145
Pnma5	Rat	C60 fullerene	decreases expression	EXP		6480464	fullerene C60 results in decreased expression of PNMA5 mRNA	CTD	PMID:19167457
Pnma5	Rat	chlorpyrifos	increases expression	ISO	Pnma5 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of PNMA5 mRNA	CTD	PMID:32715474
Pnma5	Rat	folic acid	decreases expression	ISO	Pnma5 (Mus musculus)	6480464	Folic Acid results in decreased expression of PNMA5 mRNA	CTD	PMID:25629700
Pnma5	Rat	lead(0)	affects expression	ISO	PNMA5 (Homo sapiens)	6480464	Lead affects the expression of PNMA5 mRNA	CTD	PMID:28903495
Pnma5	Rat	silicon dioxide	increases expression	ISO	PNMA5 (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of PNMA5 mRNA	CTD	PMID:25895662
Pnma5	Rat	titanium dioxide	decreases expression	ISO	Pnma5 (Mus musculus)	6480464	titanium dioxide results in decreased expression of PNMA5 mRNA	CTD	PMID:35295148
Pnma5	Rat	valproic acid	increases methylation	ISO	PNMA5 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of PNMA5 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pnma5	Rat	meiosis I	involved_in	ISO	Pnma5 (Mus musculus)	1624291	PMID:29228573	RGD	PMID:29228573
Pnma5	Rat	phosphatidylinositol 3-kinase/protein kinase B signal transduction	acts_upstream_of_or_within	ISO	Pnma5 (Mus musculus)	1624291	PMID:29228573	RGD	PMID:29228573

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pnma5	Rat	cell cortex	is_active_in	ISO	Pnma5 (Mus musculus)	1624291	PMID:29228573	RGD	PMID:29228573
Pnma5	Rat	meiotic spindle	is_active_in	ISO	Pnma5 (Mus musculus)	1624291	PMID:29228573	RGD	PMID:29228573
Pnma5	Rat	nucleus	located_in	ISO	PNMA5 (Homo sapiens)	1624291	PMID:31429579	RGD	PMID:31429579
Pnma5	Rat	nucleus	located_in	IEA	UniProtKB:Q96PV4 and ensembl:ENSP00000445775	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pnma5	Rat	identical protein binding	enables	ISO	PNMA5 (Homo sapiens)	1624291	UniProtKB:Q96PV4 more ...	RGD	PMID:25416956 and PMID:32296183
Pnma5	Rat	identical protein binding	enables	IEA	UniProtKB:Q96PV4 and ensembl:ENSP00000445775	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pnma5	Rat	protein binding	enables	ISO	PNMA5 (Homo sapiens)	1624291	UniProtKB:A1L4K1 more ...	RGD	PMID:25416956 more ...

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:25416956

Pnma5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	155,923,131 - 155,925,055 (-)	NCBI		GRCr8
mRatBN7.2	X	150,880,865 - 150,882,789 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	150,880,865 - 150,882,789 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,072,910 - 153,074,834 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,605,250 - 156,607,174 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,148,364 - 154,150,288 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	153,037,448 - 153,039,372 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	153,037,448 - 153,039,372 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	148,767,026 - 148,768,950 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,030,480 - 159,032,404 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	131,845,146 - 131,847,070 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

PNMA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	152,988,824 - 152,994,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	152,988,824 - 152,994,116 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	152,157,368 - 152,162,660 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	151,908,024 - 151,911,417 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	151,827,938 - 151,831,326	NCBI
Celera	X	152,491,524 - 152,496,827 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	140,957,736 - 140,961,176 (-)	NCBI		HuRef
CHM1_1	X	152,032,328 - 152,037,631 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,255,263 - 151,260,555 (-)	NCBI		T2T-CHM13v2.0

Pnma5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,077,587 - 72,083,315 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,077,587 - 72,080,709 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,033,981 - 73,039,721 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,033,981 - 73,037,103 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	70,279,327 - 70,282,442 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	70,279,322 - 70,282,442 (-)	NCBI		MGSCv36	mm8
Celera	X	63,958,163 - 63,961,281 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.29	NCBI

PNMA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,053,179 - 153,059,368 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,056,782 - 153,062,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	142,564,200 - 142,566,785 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,483,324 - 152,487,740 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	152,483,930 - 152,485,276 (-)	Ensembl	panpan1.1		panPan2

Pnma5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,097,358 - 118,101,500 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936714	155,618 - 157,563 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936714	155,618 - 156,955 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNMA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	123,999,037 - 124,000,974 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	123,998,935 - 124,001,201 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PNMA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	127,511,081 - 127,517,052 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	127,512,502 - 127,513,848 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	65,334,322 - 65,337,737 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	52
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000037851
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

RH143166

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	150,881,755 - 150,881,971 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	153,038,339 - 153,038,554	NCBI	Rnor6.0
Rnor_5.0	1	148,767,917 - 148,768,132	UniSTS	Rnor5.0
RGSC_v3.4	X	159,031,371 - 159,031,586	UniSTS	RGSC3.4
Celera	1	131,846,037 - 131,846,252	UniSTS
Cytogenetic Map	X	q37	UniSTS

RH139174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	150,881,785 - 150,881,969 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	153,038,369 - 153,038,552	NCBI	Rnor6.0
Rnor_5.0	1	148,767,947 - 148,768,130	UniSTS	Rnor5.0
RGSC_v3.4	X	159,031,401 - 159,031,584	UniSTS	RGSC3.4
Celera	1	131,846,067 - 131,846,250	UniSTS
Cytogenetic Map	X	q37	UniSTS

UniSTS:496785

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	150,880,736 - 150,880,962 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	150,908,926 - 150,909,152 (-)	MAPPER	mRatBN7.2
mRatBN7.2	X	150,880,736 - 150,880,962 (-)	MAPPER	mRatBN7.2
mRatBN7.2	X	150,908,926 - 150,909,152 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	153,037,320 - 153,037,545	NCBI	Rnor6.0
Rnor_6.0	X	153,066,466 - 153,066,691	NCBI	Rnor6.0
Rnor_5.0	1	148,795,491 - 148,795,716	UniSTS	Rnor5.0
Rnor_5.0	1	148,766,898 - 148,767,123	UniSTS	Rnor5.0
RGSC_v3.4	X	159,060,178 - 159,060,403	UniSTS	RGSC3.4
RGSC_v3.4	X	159,030,352 - 159,030,577	UniSTS	RGSC3.4
Celera	1	131,845,018 - 131,845,243	UniSTS
Celera	1	131,872,931 - 131,873,156	UniSTS
Cytogenetic Map	X	q37	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
3	1	3	22	10	17	2	8	2	6	29	11	16	12	45	15


RefSeq Transcripts	NM_001107579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085250 ⟹ ENSRNOP00000074335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	150,880,865 - 150,882,789 (-)	Ensembl
Rnor_6.0 Ensembl	X	153,037,448 - 153,039,372 (-)	Ensembl

RefSeq Acc Id:

NM_001107579 ⟹ NP_001101049

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	155,923,131 - 155,925,055 (-)	NCBI
mRatBN7.2	X	150,880,865 - 150,882,789 (-)	NCBI
Rnor_6.0	X	153,037,448 - 153,039,372 (-)	NCBI
Rnor_5.0	1	148,767,026 - 148,768,950 (-)	NCBI
RGSC_v3.4	X	159,030,480 - 159,032,404 (-)	RGD
Celera	1	131,845,146 - 131,847,070 (-)	NCBI

Sequence:

show sequence

ATGGCTGTAGCTCTATTAGATGACTGGTGTAAGGGGATGGATCTGGACCCCAGGAAGGCTGTACTCATTGTGGGCATCCCCGTACAGTGCACTGAAGCTGAGATAAAGGATGCTCTGAAAGAAGGCTT
ACCTCCTTTGTGTGCACACAAGGTGATAGGCAGAATGTTCAGGAGGGAAGATGAAGCTAAGGCAGTCTTAATTGAACTGACTGAAGTTGTCGATTATACTATGATGCCTACTCATATACCAGCAGAGG
GTGGGGCCTGGGAAGTGGTTGTCAAACCCCGTAGCCCAGATGATGAGTTTATCAATAAGTTGATCTACTTTCTGAGAGATGAAGGGCGGAGAATGGTAGATGTGGCCAAAGCCCTGGGGTTTAGCACT
GTCCCTACAGGGAGAATGGAGCTAAAGAATTTAGACCAAGACAAACCAAAAGGCTTGAAGTCTCTGTGCAGTAATGGCACATGTTACCAAAAACTAAAAGTGTTTTCTGGCAGTCCCTTTCCCGGCCC
AGGAGAAGAAAGCTTTGAGACCTGGTTAGAGGAGGTCACTGAGCTGATGCACTTATGGCAGGTGTCTGAGAGTGAGAAGAAGCAGCGCCTTGTGGAGAGTCTGCGTGGCTCTGCCCTGTCAATCATGC
AGGCACTGTGGGCTAGCAATGACTCCCTAACTGTGGAGCAGTGTTTGAAAGCCCTAAAGCACATCTTTGGGAATAAAGAGGACTGTAAGGTCTTCCAGTTCAGGTTCCTTCAATCTTCTCAGAAACCT
GCAGAGAAGATATCTGATTACTTGCTACGCTTAGAGCCCCTGCTGCAAAAAGCAGTACAGCAGAGCCCATTGTCAACACACAGTGCAGATTCAATTCGTCTCAAGCATATCTTATCTAGGGTCTCCAT
GACCACTGGCCTTCGGGGCAAACTATCTCTCTTAGATCAGCAAGGGTGCCCACCTACTTTTCTGGAATTAATGAAACTCACTCGAGATGAGGAAGAGTGGGAGACCACTATGGTAGGGAAGGAGCAGA
ATCAGGCAGAAAAGGAAAACAGGACACGTGAGACAGCAGATCAAGTTGTTACCCAGGAGGAGTACTTTAGGGAGATCAGCACCCAGACCATAGGAGAGGAGATCACATCAGTGAAACGGAGGCGACTG
CTATGGAGACAGAGTACTGGAGAAGAGGAACATATGAGGGAATCAGGTTTCTGGGCTGAAAATGAATCAGATGAGGAGAAACCCTTTGTTACAATACAGGAATCGGGAAACGAGAGAGGGGCTTGGGC
TATGAGCCACCCCAACCCCAAGGAAATATAGGCTCAGGACATGCAGGAATTCCTTCCTCTGGCAGGCAACAGAGATACTGTGACAAAATCATGGGGCAGCCCAGGCAAAGAGCAGGGGACATGGGTGT
TGCAGAAGAGCAGCGGGGCCAGGGTAAAGCCCCCAACTTCTTACTACTTAGAAATGATTACAACAAGCAAGGGCAAGTTCCATGCAGCTCAGTGACAACCAAATGCCAGGCCCACAGGGAGTGTCAGA
GACAGAACTGGGGAGCTAATATGATAAGCAGACTACAGGGTCATCCAGACTGTAGTTGGCATACTAGTGGGTCACAAGATGGTGACGCTGGGTGCTCTGAGCTAAGGATGCCCACCAGCACTGAAGCA
GCACAGGGCATAAAGGAGCCCGCCACGGGGTTGTCTTGGGCAGAGGACACCAGTGCCTGGGAGCAAGTACAGCTAGGGAGGGAGGGAGTACCCAGGAGAGGAGGCCGCAGGATCCAGCCTGTCTTCAG
GATCATCTACACTGCTCTAGGGGAGCCCCATGAGGGCAGCACCCTTGAGTCCTTCCGTGAGTGAACTCCCCCCACCCCCGTGAAACCCCCAATCTCCAGACCCACCAAAGGATGGGGGGATGGGGGCT
AGGCA

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Protein RefSeqs	NP_001101049	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82842	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074335
	ENSRNOP00000074335.1

RefSeq Acc Id:

NP_001101049 ⟸ NM_001107579

- UniProtKB:

D4AEL1 (UniProtKB/TrEMBL), A6KSY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVALLDDWCKGMDLDPRKAVLIVGIPVQCTEAEIKDALKEGLPPLCAHKVIGRMFRREDEAKAVLIELTEVVDYTMMPTHIPAEGGAWEVVVKPRSPDDEFINKLIYFLRDEGRRMVDVAKALGFST
VPTGRMELKNLDQDKPKGLKSLCSNGTCYQKLKVFSGSPFPGPGEESFETWLEEVTELMHLWQVSESEKKQRLVESLRGSALSIMQALWASNDSLTVEQCLKALKHIFGNKEDCKVFQFRFLQSSQKP
AEKISDYLLRLEPLLQKAVQQSPLSTHSADSIRLKHILSRVSMTTGLRGKLSLLDQQGCPPTFLELMKLTRDEEEWETTMVGKEQNQAEKENRTRETADQVVTQEEYFREISTQTIGEEITSVKRRRL
LWRQSTGEEEHMRESGFWAENESDEEKPFVTIQESGNERGAWAMSHPNPKEI

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Ensembl Acc Id:

ENSRNOP00000074335 ⟸ ENSRNOT00000085250

Protein Domains

Paraneoplastic antigen Ma-like C-terminal Paraneoplastic antigen Ma-like N-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEL1-F1-model_v2	AlphaFold	D4AEL1	1-436	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-690	BioCyc
Ensembl Genes	ENSRNOG00000058423	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085250	ENTREZGENE
	ENSRNOT00000085250.2	UniProtKB/TrEMBL
InterPro	PNMA	UniProtKB/TrEMBL
	PNMA_C	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
KEGG Report	rno:309266	UniProtKB/TrEMBL
NCBI Gene	309266	ENTREZGENE
PANTHER	PTHR23095	UniProtKB/TrEMBL
	PTHR23095:SF4	UniProtKB/TrEMBL
Pfam	PNMA	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
PhenoGen	Pnma5	PhenoGen
RatGTEx	ENSRNOG00000058423	RatGTEx
UniProt	A6KSY9	ENTREZGENE, UniProtKB/TrEMBL
	D4AEL1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-28	Pnma5	PNMA family member 5	Pnma5	paraneoplastic Ma antigen family member 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Pnma5	paraneoplastic Ma antigen family member 5	Pnma5	paraneoplastic antigen like 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-01-23	Pnma5	paraneoplastic antigen like 5	RGD1565857	similar to paraneoplastic antigen like 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1565857	similar to paraneoplastic antigen like 5	RGD1565857_predicted	similar to paraneoplastic antigen like 5 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565857_predicted	similar to paraneoplastic antigen like 5 (predicted)	LOC309266	similar to paraneoplastic antigen like 5	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC309266	similar to paraneoplastic antigen like 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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