PNMA5 (PNMA family member 5) - Rat Genome Database

Name: PNMA5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PNMA5 (PNMA family member 5) Pan paniscus

Analyze

Symbol:

PNMA5

Name:

PNMA family member 5

RGD ID:

12029152

Description:

ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN meiosis I (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN cell cortex (ortholog); meiotic spindle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

paraneoplastic antigen-like protein 5; paraneoplastic Ma antigen family member 5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,053,179 - 153,059,368 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,056,782 - 153,062,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	142,564,200 - 142,566,785 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,483,324 - 152,487,740 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	152,483,930 - 152,485,276 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

favism (ISO)

genetic disease (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

meiosis I (ISO)

Cellular Component

cell cortex (ISO)

meiotic spindle (ISO)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

References

Genomics

Comparative Map Data

PNMA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,053,179 - 153,059,368 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,056,782 - 153,062,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	142,564,200 - 142,566,785 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,483,324 - 152,487,740 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	152,483,930 - 152,485,276 (-)	Ensembl	panpan1.1		panPan2

PNMA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	152,988,824 - 152,994,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	152,988,824 - 152,994,116 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	152,157,368 - 152,162,660 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	151,908,024 - 151,911,417 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	151,827,938 - 151,831,326	NCBI
Celera	X	152,491,524 - 152,496,827 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	140,957,736 - 140,961,176 (-)	NCBI		HuRef
CHM1_1	X	152,032,328 - 152,037,631 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,255,263 - 151,260,555 (-)	NCBI		T2T-CHM13v2.0

Pnma5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,077,587 - 72,083,315 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,077,587 - 72,080,709 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,033,981 - 73,039,721 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,033,981 - 73,037,103 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	70,279,327 - 70,282,442 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	70,279,322 - 70,282,442 (-)	NCBI		MGSCv36	mm8
Celera	X	63,958,163 - 63,961,281 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.29	NCBI

Pnma5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	155,923,131 - 155,925,055 (-)	NCBI		GRCr8
mRatBN7.2	X	150,880,865 - 150,882,789 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	150,880,865 - 150,882,789 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,072,910 - 153,074,834 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,605,250 - 156,607,174 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,148,364 - 154,150,288 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	153,037,448 - 153,039,372 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	153,037,448 - 153,039,372 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	148,767,026 - 148,768,950 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,030,480 - 159,032,404 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	131,845,146 - 131,847,070 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

Pnma5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,097,358 - 118,101,500 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936714	155,618 - 157,563 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936714	155,618 - 156,955 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNMA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	123,999,037 - 124,000,974 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	123,998,935 - 124,001,201 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PNMA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	127,511,081 - 127,517,052 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	127,512,502 - 127,513,848 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	65,334,322 - 65,337,737 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008965780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055106259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055106260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063601855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000009912 ⟹ ENSPPAP00000002015

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	X	152,483,930 - 152,485,276 (-)	Ensembl

RefSeq Acc Id:

XM_008965780 ⟹ XP_008964028

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	153,053,179 - 153,056,603 (-)	NCBI
NHGRI_mPanPan1	X	153,056,782 - 153,060,205 (-)	NCBI
Mhudiblu_PPA_v0	X	142,564,200 - 142,566,785 (-)	NCBI
PanPan1.1	X	152,483,324 - 152,485,895 (-)	NCBI

Sequence:

show sequence

TCTCATTGCATTGCGCAGAGCTCAGCCATCTTTCTCATCCGTCAGGCATTCCTGAGAAAGAGGG
CCACTCTACCTCTCTTGCTGCCAGCCTTCACTCCAGCAAGGAGGGTGCTGGGTGACCTGAGCCC
ACATAGCCCTGAGCACCCGAAGCACACACAGCAGAGTCCTCTGGACTTCGAGGAAGAACCCACA
GCAGGAGGAGGCTGTGTGAAACCTGGGACCACTTCTGCCTTCCTACGTGGCAGTGGCTCAGAGT
TATTTGAGTGCTGTCAAACTGAGCTGATTGCTGCCCTAGTATTAGATCAGTCCATAGAAAGTGG
GAGCAATGGCACTGGCACTGCTAGAGGATTGGTGCAAGGGGATGGACATGGACCCCAGAAAGGC
CCTGCTGATTGTAGGCATCCCGGTGGAGTGTAGTGAGGTGGAAATTCAGGACACCGTGAAGGCA
GGCTTACAGCCCCTGTGCGCATACAGGGTCCTAGGGAGAATGTTCAGGAGGGAAGACAATGCCA
AGGCAGTCTTCATTGAACTGGCTGACACTGTCAATTACACTACTCTGCCCAGTCACATACCAGG
AAAGGGGGGCTCCTGGGAAGTGGTGGTAAAACCCCGTAACCCAGATGATGAGTTTCTCAGTAGA
CTGAACTACTTCCTGAAAGATGAGGGCCGAAGTATGACAGATGTGGCCAGAGTCCTGGGATGTT
GCAGCCTCCCTGCCCAGAGCCTGGATGCAGAGATCATGCCCCAAGTTAGATCCCTACCTTTAGA
GCCTCCGAAAGAAAGTATGTGGTACAGGAAACTGAAAGTGTTTTCGGGAACTGCTCCCCCTAGC
CCAGGCGAAGAGACCTTTGAAGACTGGCTAGAGCAGGTCACTGAGATAATGCCTATATGGCAAG
TGTCTGAGGTGGAGAAGAGGCGGCGTTTGCTGGAGAGCTTATGTGGGCCTGCTCTGTCAATCAT
GCGGGTGCTCCAGGCCAACGATGACTCCATAACTGTGGAGCAGTGCCTTGACGCCCTAAAGCAG
ATCTTTGGGGATAAAGAGGACTTTAGAGCCTCTCAGTTTAGGTTTCTGCAGACCTCTCCGAAGA
TTGGAGAGAAAGTCTCCACTTTCCTGCTGCGCTTAGAGCCCCTGCTGCAGAAAGCCGTGCACAA
GAGCCCCTTGTCAGTGCGCAGCACAGACATGATTCGTCTGAAACATCTCTTAGCTCGGGTCGCC
ATGACCCCCGCCCTCAGGGGCAAGCTGGAGCTCTTGGATCAGCGAGGGTGTCCTCCCAATTTTC
TGGAGTTAATGAAGCTCATTCGAGATGAAGAAGAGTGGGAGAACACTGAGGCAGTGATGAAGAA
TAAGGAGAAGCCGTCAGGGAGAGGCCGGGGCGCCTCCGGTAGACAGGCAAGAGCAGAAGCCAGT
GTCTCTGCACGTCAGGCCACCGTGCAGGCAAGGTCTTTTAGCGACAGCAGCCCCCAGACCATAC
AGGGAGGCTTACCCCCATTAGTGAAACGCAGGCGGCTATTAGGCAGTGAAAGCACTAGGGGAGA
AGACCATGGCCAGGCCACGTATCCCAAGACTGAAAACCAGACTCCAGGCAGGGAGGGGCCACAG
ACTGCAGGAGAGGAGTTGGGAAACGAGGCAGGGGCTGGGGCCATGAGCCATCCCAAGCCCTGGG
AAACATAGGCTCAGAAGACCGAAGCACTCCTTCCCCTGGCAGGCAGCAGGGACATTTGAACAAG
GGGAAGGGGCAGCTTACACTAACAGGGAAGTTGACTGGGGCAGAGGGACAGGGAAGCCAGGTCG
ATTTCAAGCCCCCTTACTTTCCACCAGCTGGAAGGGACTTCACCAACCAAGACCAAATAGCATC
TGGTTCAGTGGGGGCCGGGCCCATAGCCCCTAACAGGTACAGGAGACACAAGCGGGGAACCACT
ACACTTAGCACATGGGGTTCCTGGGCTTCAGATGGGGACCCCAGCGAAGCAGGGGCTGAAGAAG
GTGTGGCTGGGGGCTCTGGCCTGGTCCTCTGGACACCCCCAAATATCTACCCTGTGGACTTTGA
GCTGAGCATGCCCACTGGCACCCAGGCCACGTGGGACCTGGAGGAGCCTGCCTGGGGCCTGCCT
CTGTCAGAAGGAGCCAGGGCTGCTGAGGAAGAGCTGTGGGGCAGAAGTGAAGCCCCGCAGGGGA
GGCCACAGGATCCAGCCTGTCTTTAGGATCATCTACACTGCATGAGGGGAGCCCCAGGAAGGCA
GCATTCATAAGCCCCTGCACCAGTGAGGAAGAGAAAGA

hide sequence

RefSeq Acc Id:

XM_034949419 ⟹ XP_034805310

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	153,053,179 - 153,056,603 (-)	NCBI
NHGRI_mPanPan1	X	153,056,782 - 153,060,205 (-)	NCBI
Mhudiblu_PPA_v0	X	142,564,200 - 142,566,785 (-)	NCBI

RefSeq Acc Id:

XM_055106259 ⟹ XP_054962234

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	153,053,179 - 153,059,367 (-)	NCBI
NHGRI_mPanPan1	X	153,056,782 - 153,062,686 (-)	NCBI

RefSeq Acc Id:

XM_055106260 ⟹ XP_054962235

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	153,053,179 - 153,059,368 (-)	NCBI
NHGRI_mPanPan1	X	153,056,782 - 153,062,152 (-)	NCBI

RefSeq Acc Id:

XM_063601855 ⟹ XP_063457925

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	153,053,179 - 153,056,595 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008964028	(Get FASTA)	NCBI Sequence Viewer
	XP_034805310	(Get FASTA)	NCBI Sequence Viewer
	XP_054962234	(Get FASTA)	NCBI Sequence Viewer
	XP_054962235	(Get FASTA)	NCBI Sequence Viewer
	XP_063457925	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000002015.1

RefSeq Acc Id:

XP_008964028 ⟸ XM_008965780

- UniProtKB:

A0A2R8ZAG4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALALLEDWCKGMDMDPRKALLIVGIPVECSEVEIQDTVKAGLQPLCAYRVLGRMFRREDNAKA
VFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDVARVLGCCS
LPAQSLDAEIMPQVRSLPLEPPKESMWYRKLKVFSGTAPPSPGEETFEDWLEQVTEIMPIWQVS
EVEKRRRLLESLCGPALSIMRVLQANDDSITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIG
EKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTPALRGKLELLDQRGCPPNFLE
LMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEASVSARQATVQARSFSDSSPQTIQG
GLPPLVKRRRLLGSESTRGEDHGQATYPKTENQTPGREGPQTAGEELGNEAGAGAMSHPKPWET

hide sequence

RefSeq Acc Id:	XP_034805310 ⟸ XM_034949419
- UniProtKB:	A0A2R8ZAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000002015 ⟸ ENSPPAT00000009912

RefSeq Acc Id:

XP_054962234 ⟸ XM_055106259

RefSeq Acc Id:

XP_054962235 ⟸ XM_055106260

RefSeq Acc Id:

XP_063457925 ⟸ XM_063601855

Protein Domains

Paraneoplastic antigen Ma-like C-terminal Paraneoplastic antigen Ma-like N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000009176	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000009912.1	UniProtKB/TrEMBL
InterPro	PNMA	UniProtKB/TrEMBL
	PNMA_C	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
KEGG Report	pps:100974354	UniProtKB/TrEMBL
NCBI Gene	PNMA5	ENTREZGENE
PANTHER	PTHR23095	UniProtKB/TrEMBL
	PTHR23095:SF4	UniProtKB/TrEMBL
Pfam	PNMA	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
UniProt	A0A2R8ZAG4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-26	PNMA5	PNMA family member 5		paraneoplastic Ma antigen family member 5	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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