Or4c117 (olfactory receptor family 4 subfamily C member 117) - Rat Genome Database

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Gene: Or4c117 (olfactory receptor family 4 subfamily C member 117) Mus musculus
Analyze
No known orthologs.
Symbol: Or4c117
Name: olfactory receptor family 4 subfamily C member 117
RGD ID: 1557914
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR4C15 (olfactory receptor family 4 subfamily C member 15).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2Q125-50604368-50603433; MOR233-; MOR233-14; olfactory receptor 1222; olfactory receptor MOR233-14; Olfr1222
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39288,955,138 - 88,956,073 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl288,953,229 - 88,963,398 (-)EnsemblGRCm39 Ensembl
GRCm38289,124,794 - 89,125,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl289,122,885 - 89,133,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv37288,964,951 - 88,965,886 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36288,925,633 - 88,926,568 (-)NCBIMGSCv36mm8
Celera290,708,139 - 90,709,074 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:188
Interacting mature miRNAs:197
Transcripts:ENSMUST00000099794, ENSMUST00000137595
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301897Scc2_mcolon tumor susceptibility 2 (mouse)Not determined28572426990410991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000099794   ⟹   ENSMUSP00000097382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl288,955,138 - 88,956,073 (-)Ensembl
GRCm38.p6 Ensembl289,124,794 - 89,125,729 (-)Ensembl
Ensembl Acc Id: ENSMUST00000214027   ⟹   ENSMUSP00000149001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl288,954,646 - 88,963,396 (-)Ensembl
GRCm38.p6 Ensembl289,124,302 - 89,133,052 (-)Ensembl
Ensembl Acc Id: ENSMUST00000215816   ⟹   ENSMUSP00000150144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl288,953,229 - 88,963,398 (-)Ensembl
GRCm38.p6 Ensembl289,122,885 - 89,133,054 (-)Ensembl
RefSeq Acc Id: NM_001011860   ⟹   NP_001011860
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39288,955,138 - 88,956,073 (-)NCBI
GRCm38289,124,794 - 89,125,729 (-)NCBI
MGSCv37288,964,951 - 88,965,886 (-)RGD
Celera290,708,139 - 90,709,074 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001011860 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAP71622 (Get FASTA)   NCBI Sequence Viewer  
  EDL27449 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000097382
  ENSMUSP00000097382.2
  ENSMUSP00000149001.2
  ENSMUSP00000150144.2
RefSeq Acc Id: NP_001011860   ⟸   NM_001011860
- UniProtKB: Q7TR02 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000097382   ⟸   ENSMUST00000099794
Ensembl Acc Id: ENSMUSP00000150144   ⟸   ENSMUST00000215816
Ensembl Acc Id: ENSMUSP00000149001   ⟸   ENSMUST00000214027
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TR02-F1-model_v2 AlphaFold Q7TR02 1-311 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031056 AgrOrtholog
Ensembl Genes ENSMUSG00000075101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099794 ENTREZGENE
  ENSMUST00000099794.2 UniProtKB/TrEMBL
  ENSMUST00000214027.2 UniProtKB/TrEMBL
  ENSMUST00000215816.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report mmu:258177 UniProtKB/TrEMBL
MGD MGI:3031056 ENTREZGENE
NCBI Gene 258177 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4c117 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TR02 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or4c117  olfactory receptor family 4 subfamily C member 117  Olfr1222  olfactory receptor 1222  Symbol and/or name change 5135510 APPROVED