Magea9 (MAGE family member A9) - Rat Genome Database

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Gene: Magea9 (MAGE family member A9) Mus musculus
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Symbol: Magea9
Name: MAGE family member A9
RGD ID: 1557634
MGI Page MGI
Description: Predicted to enable caspase binding activity and histone deacetylase binding activity. Predicted to be involved in negative regulation of cysteine-type endopeptidase activity and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleoplasm. Predicted to be active in nucleus. Orthologous to several human genes including MAGEA10 (MAGE family member A10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3830417A13Rik; hypothetical protein LOC70696; uncharacterized protein LOC70696
RGD Orthologs
Human
Rat
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X63,217,154 - 63,222,385 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX63,217,154 - 63,222,384 (+)EnsemblGRCm39 Ensembl
GRCm38X64,173,548 - 64,178,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX64,173,548 - 64,178,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X61,426,723 - 61,431,953 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X60,434,227 - 60,439,443 (+)NCBIMGSCv36mm8
CeleraX50,571,393 - 50,576,623 (+)NCBICelera
Cytogenetic MapXA7.1NCBI
cM MapX34.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
endoplasmic reticulum  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:24721909   PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
Magea9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X63,217,154 - 63,222,385 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX63,217,154 - 63,222,384 (+)EnsemblGRCm39 Ensembl
GRCm38X64,173,548 - 64,178,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX64,173,548 - 64,178,778 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X61,426,723 - 61,431,953 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X60,434,227 - 60,439,443 (+)NCBIMGSCv36mm8
CeleraX50,571,393 - 50,576,623 (+)NCBICelera
Cytogenetic MapXA7.1NCBI
cM MapX34.57NCBI
MAGEA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X149,781,877 - 149,787,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX149,781,930 - 149,787,737 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblX149,581,653 - 149,587,459 (-)EnsemblGRCh38hg38GRCh38
GRCh37X148,863,593 - 148,869,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X148,671,402 - 148,677,206 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X148,569,255 - 148,575,058NCBI
CeleraX149,194,726 - 149,200,530 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX137,617,079 - 137,622,883 (-)NCBIHuRef
CHM1_1X148,824,495 - 148,830,295 (+)NCBICHM1_1
T2T-CHM13v2.0X148,047,665 - 148,053,471 (+)NCBIT2T-CHM13v2.0
Magea9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X147,655,721 - 147,661,093 (+)NCBIGRCr8
mRatBN7.2X142,619,282 - 142,624,654 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX142,619,395 - 142,624,653 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX144,817,604 - 144,820,374 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X148,342,571 - 148,345,341 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X145,892,301 - 145,895,071 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X147,491,247 - 147,496,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX147,493,880 - 147,496,649 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X147,512,048 - 147,514,818 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X149,962,817 - 149,965,587 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX138,499,498 - 138,502,268 (+)NCBICelera
Cytogenetic MapXq36NCBI
MAGEA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X124,358,947 - 124,372,897 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606562,001,202 - 62,006,328 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Magea9
142 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:340
Count of miRNA genes:292
Interacting mature miRNAs:320
Transcripts:ENSMUST00000033522, ENSMUST00000151996
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
12880401Emlq3_memotional learning QTL 3 (mouse)X5799218370090431Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000033522   ⟹   ENSMUSP00000033522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX63,217,154 - 63,222,384 (+)Ensembl
GRCm38.p6 EnsemblX64,173,548 - 64,178,778 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151996   ⟹   ENSMUSP00000122540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX63,217,954 - 63,221,113 (+)Ensembl
GRCm38.p6 EnsemblX64,174,348 - 64,177,507 (+)Ensembl
RefSeq Acc Id: NM_027512   ⟹   NP_081788
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X63,217,154 - 63,222,384 (+)NCBI
GRCm38X64,173,548 - 64,178,778 (+)ENTREZGENE
MGSCv37X61,426,723 - 61,431,953 (+)RGD
CeleraX50,571,393 - 50,576,623 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030251497   ⟹   XP_030107357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X63,217,931 - 63,222,385 (+)NCBI
GRCm38X64,174,325 - 64,178,779 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251498   ⟹   XP_030107358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X63,217,917 - 63,222,385 (+)NCBI
GRCm38X64,174,311 - 64,178,779 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081788   ⟸   NM_027512
- UniProtKB: Q8BQJ2 (UniProtKB/TrEMBL),   Q6NV89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107358   ⟸   XM_030251498
- Peptide Label: isoform X1
- UniProtKB: Q8BQJ2 (UniProtKB/TrEMBL),   Q6NV89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107357   ⟸   XM_030251497
- Peptide Label: isoform X1
- UniProtKB: Q8BQJ2 (UniProtKB/TrEMBL),   Q6NV89 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000122540   ⟸   ENSMUST00000151996
Ensembl Acc Id: ENSMUSP00000033522   ⟸   ENSMUST00000033522
Protein Domains
MAGE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BQJ2-F1-model_v2 AlphaFold Q8BQJ2 1-303 view protein structure

Promoters
RGD ID:13680608
Promoter ID:EPDNEW_M24452
Type:multiple initiation site
Name:3830417A13Rik_1
Description:Mus musculus RIKEN cDNA 3830417A13 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24453  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X64,173,548 - 64,173,608EPDNEW
RGD ID:13680606
Promoter ID:EPDNEW_M24453
Type:single initiation site
Name:3830417A13Rik_2
Description:Mus musculus RIKEN cDNA 3830417A13 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24452  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X64,176,955 - 64,177,015EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917946 AgrOrtholog
Ensembl Genes ENSMUSG00000031179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033522 ENTREZGENE
  ENSMUST00000033522.15 UniProtKB/TrEMBL
  ENSMUST00000151996.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
KEGG Report mmu:70696 UniProtKB/TrEMBL
MGD MGI:1917946 ENTREZGENE
NCBI Gene 70696 ENTREZGENE
PANTHER MAGE FAMILY MEMBER A9 UniProtKB/TrEMBL
  PTHR11736 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PhenoGen Magea9 PhenoGen
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
UniProt A2AMW6_MOUSE UniProtKB/TrEMBL
  Q6NV89 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQJ2 ENTREZGENE, UniProtKB/TrEMBL
  Q9D6B3_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-17 Magea9  MAGE family member A9  3830417A13Rik  RIKEN cDNA 3830417A13 gene  Symbol and/or name updated 27372883 PROVISIONAL