Wdr13 (WD repeat domain 13) - Rat Genome Database

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Gene: Wdr13 (WD repeat domain 13) Mus musculus
Analyze
Symbol: Wdr13
Name: WD repeat domain 13
RGD ID: 1557622
MGI Page MGI
Description: Enables promoter-specific chromatin binding activity. Acts upstream of or within negative regulation of type B pancreatic cell proliferation. Predicted to be located in centriolar satellite; nucleoplasm; and plasma membrane. Predicted to be active in nucleus. Is expressed in central nervous system and retina. Orthologous to human WDR13 (WD repeat domain 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700060B08Rik; 5730411P10Rik; DXHXS7467; DXHXS7467e; memory-related protein; MGC117822; MGC158990; mMg21; RIKEN cDNA 5730411P10 gene; W51679; WD repeat protein 13; WD repeat-containing protein 13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,989,540 - 7,999,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,989,540 - 7,999,131 (-)EnsemblGRCm39 Ensembl
GRCm38X8,123,301 - 8,132,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,123,301 - 8,132,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,700,427 - 7,709,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X7,280,293 - 7,289,397 (-)NCBIMGSCv36mm8
CeleraX3,336,407 - 3,345,965 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriolar satellite  (IEA,ISO)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutations in a delta 8-delta 7 sterol isomerase in the tattered mouse and X-linked dominant chondrodysplasia punctata. jderry@immunex.com. Derry JM, etal., Nat Genet 1999 Jul;22(3):286-90.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. A transcript map of a 2-Mb BAC contig in the proximal portion of the mouse X chromosome and regional mapping of the scurfy mutation. Means GD, etal., Genomics 2000 May 1;65(3):213-23.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15761153   PMID:15782199   PMID:16094675   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:22715406   PMID:24319055   PMID:26306915   PMID:27625594   PMID:28222755   PMID:29743870   PMID:30369599   PMID:32325033   PMID:32883989  
PMID:34321999  


Genomics

Comparative Map Data
Wdr13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,989,540 - 7,999,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,989,540 - 7,999,131 (-)EnsemblGRCm39 Ensembl
GRCm38X8,123,301 - 8,132,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,123,301 - 8,132,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,700,427 - 7,709,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X7,280,293 - 7,289,397 (-)NCBIMGSCv36mm8
CeleraX3,336,407 - 3,345,965 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.67NCBI
WDR13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,597,492 - 48,608,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,590,042 - 48,608,869 (+)EnsemblGRCh38hg38GRCh38
GRCh37X48,455,880 - 48,467,257 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,340,845 - 48,348,518 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X48,212,154 - 48,219,828NCBI
CeleraX53,202,158 - 53,209,859 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,119,373 - 46,127,116 (+)NCBIHuRef
CHM1_1X48,487,115 - 48,494,815 (+)NCBICHM1_1
T2T-CHM13v2.0X48,006,491 - 48,017,871 (+)NCBIT2T-CHM13v2.0
Wdr13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,034,779 - 17,045,682 (+)NCBIGRCr8
mRatBN7.2X14,362,484 - 14,373,727 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,362,860 - 14,373,727 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,176,180 - 19,187,046 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,896,034 - 20,906,900 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X17,161,225 - 17,172,091 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,112,663 - 15,123,825 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,113,878 - 15,122,146 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,895,830 - 15,906,986 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,394,400 - 26,402,277 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX14,448,830 - 14,456,706 (+)NCBICelera
Cytogenetic MapXq12NCBI
Wdr13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543182,279 - 190,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543182,279 - 190,435 (+)NCBIChiLan1.0ChiLan1.0
WDR13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,086,391 - 50,097,783 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,089,763 - 50,101,155 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,895,793 - 40,907,183 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,750,502 - 48,765,111 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,757,416 - 48,765,111 (+)Ensemblpanpan1.1panPan2
WDR13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,818,916 - 41,825,815 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,818,950 - 41,825,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,195,277 - 16,202,190 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X50,252,408 - 50,259,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX50,252,412 - 50,259,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,941,934 - 41,948,847 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,930,304 - 41,937,200 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,024,053 - 42,030,968 (+)NCBIUU_Cfam_GSD_1.0
Wdr13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,326,121 - 34,353,854 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721566,520 - 574,934 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721566,529 - 594,203 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,722,730 - 42,730,199 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,715,097 - 42,730,200 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,610,683 - 47,614,916 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,721,318 - 45,729,152 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX45,721,406 - 45,733,103 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,198,138 - 11,205,800 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893422,872 - 431,515 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893422,964 - 434,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr13
307 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3782
Count of miRNA genes:798
Interacting mature miRNAs:1060
Transcripts:ENSMUST00000033506, ENSMUST00000115623, ENSMUST00000127062, ENSMUST00000130050, ENSMUST00000130832, ENSMUST00000131929, ENSMUST00000133292, ENSMUST00000148135, ENSMUST00000149257, ENSMUST00000153839
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
RH125294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X8,123,584 - 8,123,702UniSTSGRCm38
MGSCv37X7,700,710 - 7,700,828UniSTSGRCm37
CeleraX3,345,564 - 3,345,682UniSTS
Cytogenetic MapXA1.1UniSTS
MARC_26104-26105:1032794768:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X8,129,108 - 8,130,067UniSTSGRCm38
MGSCv37X7,706,234 - 7,707,193UniSTSGRCm37
CeleraX3,339,199 - 3,340,158UniSTS
Cytogenetic MapXA1.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF220146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF353243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF353244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF513713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA328437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF739215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033506   ⟹   ENSMUSP00000033506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,989,540 - 7,999,047 (-)Ensembl
GRCm38.p6 EnsemblX8,123,301 - 8,132,808 (-)Ensembl
Ensembl Acc Id: ENSMUST00000115623   ⟹   ENSMUSP00000111286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,991,647 - 7,999,059 (-)Ensembl
GRCm38.p6 EnsemblX8,125,408 - 8,132,820 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127062   ⟹   ENSMUSP00000138509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,991,543 - 7,999,062 (-)Ensembl
GRCm38.p6 EnsemblX8,125,304 - 8,132,823 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,998,356 - 7,999,131 (-)Ensembl
GRCm38.p6 EnsemblX8,132,117 - 8,132,892 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130832   ⟹   ENSMUSP00000138468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,989,563 - 7,999,009 (-)Ensembl
GRCm38.p6 EnsemblX8,123,324 - 8,132,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,991,940 - 7,994,756 (-)Ensembl
GRCm38.p6 EnsemblX8,125,701 - 8,128,517 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133292   ⟹   ENSMUSP00000138392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,989,542 - 7,999,097 (-)Ensembl
GRCm38.p6 EnsemblX8,123,303 - 8,132,858 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,994,273 - 7,999,058 (-)Ensembl
GRCm38.p6 EnsemblX8,128,034 - 8,132,819 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,995,957 - 7,998,750 (-)Ensembl
GRCm38.p6 EnsemblX8,129,718 - 8,132,511 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153839   ⟹   ENSMUSP00000120395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,995,380 - 7,999,084 (-)Ensembl
GRCm38.p6 EnsemblX8,129,141 - 8,132,845 (-)Ensembl
RefSeq Acc Id: NM_001290783   ⟹   NP_001277712
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,540 - 7,999,097 (-)NCBI
GRCm38X8,123,301 - 8,132,858 (-)NCBI
CeleraX3,336,407 - 3,345,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026137   ⟹   NP_080413
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,540 - 7,999,097 (-)NCBI
GRCm38X8,123,301 - 8,132,858 (-)NCBI
MGSCv37X7,700,427 - 7,709,984 (-)RGD
CeleraX3,336,407 - 3,345,965 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028542   ⟹   NP_082818
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,540 - 7,999,097 (-)NCBI
GRCm38X8,123,301 - 8,132,858 (-)NCBI
CeleraX3,336,407 - 3,345,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527703   ⟹   XP_006527766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,542 - 7,999,134 (-)NCBI
GRCm38X8,123,303 - 8,132,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162110   ⟹   XP_036018003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,542 - 7,999,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162111   ⟹   XP_036018004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,542 - 7,999,081 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162112   ⟹   XP_036018005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,989,542 - 7,999,128 (-)NCBI
Sequence:
RefSeq Acc Id: NP_080413   ⟸   NM_026137
- Peptide Label: isoform 1
- UniProtKB: Q91V09 (UniProtKB/Swiss-Prot),   Q32P16 (UniProtKB/TrEMBL),   Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527766   ⟸   XM_006527703
- Peptide Label: isoform X1
- UniProtKB: Q91V09 (UniProtKB/Swiss-Prot),   Q32P16 (UniProtKB/TrEMBL),   Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082818   ⟸   NM_028542
- Peptide Label: isoform 2
- UniProtKB: Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL),   S4R225 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277712   ⟸   NM_001290783
- Peptide Label: isoform 2
- UniProtKB: Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL),   S4R225 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000138468   ⟸   ENSMUST00000130832
Ensembl Acc Id: ENSMUSP00000138392   ⟸   ENSMUST00000133292
Ensembl Acc Id: ENSMUSP00000138509   ⟸   ENSMUST00000127062
Ensembl Acc Id: ENSMUSP00000033506   ⟸   ENSMUST00000033506
Ensembl Acc Id: ENSMUSP00000111286   ⟸   ENSMUST00000115623
Ensembl Acc Id: ENSMUSP00000120395   ⟸   ENSMUST00000153839
RefSeq Acc Id: XP_036018005   ⟸   XM_036162112
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036018003   ⟸   XM_036162110
- Peptide Label: isoform X1
- UniProtKB: Q91V09 (UniProtKB/Swiss-Prot),   Q32P16 (UniProtKB/TrEMBL),   Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018004   ⟸   XM_036162111
- Peptide Label: isoform X2
- UniProtKB: Q8K412 (UniProtKB/TrEMBL),   Q9CYL7 (UniProtKB/TrEMBL),   S4R225 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91V09-F1-model_v2 AlphaFold Q91V09 1-485 view protein structure

Promoters
RGD ID:6846511
Promoter ID:MM_KWN:59478
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000043680
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,705,176 - 7,706,337 (-)MPROMDB
RGD ID:6846512
Promoter ID:MM_KWN:59479
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Liver,   MEF_B6,   Spleen
Transcripts:UC009SNU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,709,011 - 7,709,511 (-)MPROMDB
RGD ID:6846510
Promoter ID:MM_KWN:59480
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000115623,   OTTMUST00000043671,   OTTMUST00000043672,   OTTMUST00000043673,   OTTMUST00000043674,   OTTMUST00000043676,   OTTMUST00000043677,   OTTMUST00000043678,   OTTMUST00000043679
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,709,421 - 7,710,667 (-)MPROMDB
RGD ID:13680036
Promoter ID:EPDNEW_M24166
Type:multiple initiation site
Name:Wdr13_2
Description:Mus musculus WD repeat domain 13 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24167  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X8,131,712 - 8,131,772EPDNEW
RGD ID:13680034
Promoter ID:EPDNEW_M24167
Type:multiple initiation site
Name:Wdr13_1
Description:Mus musculus WD repeat domain 13 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24166  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X8,132,834 - 8,132,894EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914661 AgrOrtholog
Ensembl Genes ENSMUSG00000031166 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033506 ENTREZGENE
  ENSMUST00000033506.13 UniProtKB/Swiss-Prot
  ENSMUST00000115623 ENTREZGENE
  ENSMUST00000115623.8 UniProtKB/Swiss-Prot
  ENSMUST00000127062.9 UniProtKB/TrEMBL
  ENSMUST00000130832 ENTREZGENE
  ENSMUST00000130832.8 UniProtKB/TrEMBL
  ENSMUST00000133292.8 UniProtKB/TrEMBL
  ENSMUST00000153839.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_repeat-ST_regulator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914661 ENTREZGENE
NCBI Gene Wdr13 ENTREZGENE
PANTHER WD REPEAT PROTEIN 26-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr13 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AC24_MOUSE UniProtKB/TrEMBL
  Q32P16 ENTREZGENE, UniProtKB/TrEMBL
  Q8K412 ENTREZGENE, UniProtKB/TrEMBL
  Q91V09 ENTREZGENE
  Q9CYL7 ENTREZGENE
  S4R225 ENTREZGENE, UniProtKB/TrEMBL
  S4R258_MOUSE UniProtKB/TrEMBL
  WDR13_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9CYL7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Wdr13  WD repeat domain 13  5730411P10Rik  RIKEN cDNA 5730411P10 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 5730411P10Rik  RIKEN cDNA 5730411P10 gene  Wdr13  WD repeat domain 13  Symbol and/or name change 5135510 APPROVED