Plxdc1 (plexin domain containing 1) - Rat Genome Database

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Gene: Plxdc1 (plexin domain containing 1) Mus musculus
Analyze
Symbol: Plxdc1
Name: plexin domain containing 1
RGD ID: 1557577
MGI Page MGI
Description: Predicted to be involved in spinal cord development. Located in cytoplasm and plasma membrane. Orthologous to human PLXDC1 (plexin domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410003I07Rik; AI848450; MGC130377; plexin domain-containing protein 1; Tem7; TEM7 related; TEM7R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,814,063 - 97,879,393 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,814,064 - 97,877,270 (-)EnsemblGRCm39 Ensembl
GRCm381197,923,237 - 97,986,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,923,238 - 97,986,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,784,551 - 97,847,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,739,328 - 97,802,470 (-)NCBIMGSCv36mm8
Celera11107,572,091 - 107,636,900 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11559528   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15574754   PMID:16129827   PMID:16141072   PMID:16141073  
PMID:16202431   PMID:16574105   PMID:16602821   PMID:17145500   PMID:17280871   PMID:18799693   PMID:20919742   PMID:22019888   PMID:23382219   PMID:29500915  


Genomics

Comparative Map Data
Plxdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,814,063 - 97,879,393 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,814,064 - 97,877,270 (-)EnsemblGRCm39 Ensembl
GRCm381197,923,237 - 97,986,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,923,238 - 97,986,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,784,551 - 97,847,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,739,328 - 97,802,470 (-)NCBIMGSCv36mm8
Celera11107,572,091 - 107,636,900 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.31NCBI
PLXDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381739,063,313 - 39,152,967 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1739,063,313 - 39,154,394 (-)EnsemblGRCh38hg38GRCh38
GRCh371737,219,566 - 37,307,890 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,473,082 - 34,561,298 (-)NCBINCBI36Build 36hg18NCBI36
Build 341734,473,082 - 34,561,298NCBI
Celera1733,880,385 - 33,968,781 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1733,015,096 - 33,103,405 (-)NCBIHuRef
CHM1_11737,455,276 - 37,544,219 (-)NCBICHM1_1
T2T-CHM13v2.01739,927,167 - 40,015,495 (-)NCBIT2T-CHM13v2.0
Plxdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,418,837 - 83,478,451 (-)NCBIGRCr8
mRatBN7.21082,922,499 - 82,982,124 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,922,508 - 82,982,130 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,871,087 - 87,930,400 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,369,172 - 87,428,484 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,761,777 - 82,821,103 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,871,122 - 85,938,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,871,122 - 85,938,085 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,657,448 - 85,726,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,688,500 - 86,748,229 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,704,112 - 86,762,473 (-)NCBI
Celera1081,675,768 - 81,735,367 (-)NCBICelera
Cytogenetic Map10q31NCBI
Plxdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,982,443 - 14,028,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,982,443 - 14,028,235 (-)NCBIChiLan1.0ChiLan1.0
PLXDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21925,784,725 - 25,871,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,680,038 - 27,765,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,117,840 - 18,208,788 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,394,743 - 18,484,094 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,395,119 - 18,484,094 (+)Ensemblpanpan1.1panPan2
PLXDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,210,930 - 23,272,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,210,925 - 23,270,995 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,682,401 - 22,743,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,005,250 - 24,066,630 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,004,567 - 24,066,635 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,777,111 - 22,838,666 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,038,178 - 23,099,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,163,352 - 23,224,700 (+)NCBIUU_Cfam_GSD_1.0
Plxdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,641,852 - 22,705,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,370,795 - 14,424,209 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,370,767 - 14,425,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,073,302 - 23,142,547 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,073,292 - 23,142,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,526,506 - 23,586,867 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLXDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,015,482 - 67,102,761 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1667,016,829 - 67,106,635 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607737,964,318 - 38,095,405 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,757,668 - 3,792,506 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,756,641 - 3,793,006 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plxdc1
2184 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:833
Count of miRNA genes:420
Interacting mature miRNAs:472
Transcripts:ENSMUST00000017561, ENSMUST00000107564, ENSMUST00000107565, ENSMUST00000141708
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119689769399327028Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
AI848450  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,923,307 - 97,923,456UniSTSGRCm38
MGSCv371197,784,621 - 97,784,770UniSTSGRCm37
Celera11107,572,161 - 107,572,310UniSTS
Cytogenetic Map11DUniSTS
Whitehead/MRC_RH111299.69UniSTS
RH134568  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,969,087 - 97,969,300UniSTSGRCm38
MGSCv371197,830,401 - 97,830,614UniSTSGRCm37
Celera11107,619,543 - 107,619,756UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map11DUniSTS
Cox5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38957,528,985 - 57,530,358UniSTSGRCm38
GRCm381197,968,912 - 97,969,117UniSTSGRCm38
MGSCv371197,830,467 - 97,830,613UniSTSGRCm37
MGSCv37957,379,507 - 57,380,142UniSTSGRCm37
Celera954,764,561 - 54,765,934UniSTS
Celera11107,619,368 - 107,619,573UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map9BUniSTS
cM Map9 UniSTS
cM Map1156.0UniSTS
cM Map1156.0UniSTS
D2S2154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,725,851 - 110,726,027UniSTSGRCm38
GRCm388122,107,521 - 122,108,207UniSTSGRCm38
MGSCv379110,628,355 - 110,628,531UniSTSGRCm37
MGSCv378124,631,421 - 124,632,107UniSTSGRCm37
Celera9110,455,649 - 110,455,825UniSTS
Celera8126,334,738 - 126,335,424UniSTS
Cytogenetic Map9FUniSTS
Cytogenetic Map11DUniSTS
cM Map958.0UniSTS
Cox5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,969,153 - 97,969,299UniSTSGRCm38
GRCm38957,531,700 - 57,532,335UniSTSGRCm38
MGSCv371197,830,467 - 97,830,613UniSTSGRCm37
MGSCv37957,379,507 - 57,380,142UniSTSGRCm37
Celera11107,619,609 - 107,619,755UniSTS
Celera954,767,274 - 54,767,908UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000017561   ⟹   ENSMUSP00000017561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,814,064 - 97,877,270 (-)Ensembl
GRCm38.p6 Ensembl1197,923,238 - 97,986,444 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107564   ⟹   ENSMUSP00000103190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,869,082 - 97,877,256 (-)Ensembl
GRCm38.p6 Ensembl1197,978,256 - 97,986,430 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107565   ⟹   ENSMUSP00000103191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,814,482 - 97,877,225 (-)Ensembl
GRCm38.p6 Ensembl1197,923,656 - 97,986,399 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1197,827,669 - 97,877,259 (-)Ensembl
GRCm38.p6 Ensembl1197,936,843 - 97,986,433 (-)Ensembl
RefSeq Acc Id: NM_001163608   ⟹   NP_001157080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,814,063 - 97,877,272 (-)NCBI
GRCm381197,923,237 - 97,986,446 (-)NCBI
MGSCv371197,784,551 - 97,847,760 (-)RGD
Celera11107,572,091 - 107,636,900 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028199   ⟹   NP_082475
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,814,063 - 97,877,272 (-)NCBI
GRCm381197,923,237 - 97,986,446 (-)NCBI
MGSCv371197,784,551 - 97,847,760 (-)RGD
Celera11107,572,091 - 107,636,900 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534301   ⟹   XP_006534364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,842,184 - 97,877,490 (-)NCBI
GRCm381197,953,024 - 97,986,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157011   ⟹   XP_036012904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,814,064 - 97,879,393 (-)NCBI
Sequence:
RefSeq Acc Id: NP_082475   ⟸   NM_028199
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8BM20 (UniProtKB/Swiss-Prot),   Q29R73 (UniProtKB/Swiss-Prot),   A2A538 (UniProtKB/Swiss-Prot),   A2A537 (UniProtKB/Swiss-Prot),   Q9CWV5 (UniProtKB/Swiss-Prot),   Q91ZV7 (UniProtKB/Swiss-Prot),   A0A172Q399 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157080   ⟸   NM_001163608
- Peptide Label: isoform 1 precursor
- UniProtKB: Q91ZV7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534364   ⟸   XM_006534301
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000103191   ⟸   ENSMUST00000107565
Ensembl Acc Id: ENSMUSP00000103190   ⟸   ENSMUST00000107564
Ensembl Acc Id: ENSMUSP00000017561   ⟸   ENSMUST00000017561
RefSeq Acc Id: XP_036012904   ⟸   XM_036157011
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZV7-F1-model_v2 AlphaFold Q91ZV7 1-500 view protein structure

Promoters
RGD ID:8676446
Promoter ID:EPDNEW_M16254
Type:initiation region
Name:Plxdc1_1
Description:Mus musculus plexin domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381197,986,433 - 97,986,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919574 AgrOrtholog
Ensembl Genes ENSMUSG00000017417 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000017561 ENTREZGENE
  ENSMUST00000017561.15 UniProtKB/Swiss-Prot
  ENSMUST00000107564.2 UniProtKB/TrEMBL
  ENSMUST00000107565 ENTREZGENE
  ENSMUST00000107565.3 UniProtKB/Swiss-Prot
InterPro Plexin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLXDC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72324 UniProtKB/Swiss-Prot
MGD MGI:1919574 ENTREZGENE
NCBI Gene 72324 ENTREZGENE
PANTHER PTHR13055 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13055:SF10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plxdc1 PhenoGen
UniProt A0A172Q399 ENTREZGENE, UniProtKB/TrEMBL
  A2A537 ENTREZGENE
  A2A538 ENTREZGENE
  A2A539_MOUSE UniProtKB/TrEMBL
  PLDX1_MOUSE UniProtKB/Swiss-Prot
  Q29R73 ENTREZGENE
  Q8BM20 ENTREZGENE
  Q91ZV7 ENTREZGENE
  Q9CWV5 ENTREZGENE
UniProt Secondary A2A537 UniProtKB/Swiss-Prot
  A2A538 UniProtKB/Swiss-Prot
  Q29R73 UniProtKB/Swiss-Prot
  Q8BM20 UniProtKB/Swiss-Prot
  Q9CWV5 UniProtKB/Swiss-Prot