Gm24198 (predicted gene, 24198) - Rat Genome Database

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Gene: Gm24198 (predicted gene, 24198) Mus musculus
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Symbol: Gm24198
Name: predicted gene, 24198
RGD ID: 15556557
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC115487859; U6 spliceosomal RNA
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,348,990 - 54,349,095 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,348,988 - 54,349,095 (+)EnsemblGRCm39 Ensembl
GRCm381154,458,164 - 54,458,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,458,162 - 54,458,269 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm24198
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:60
Interacting mature miRNAs:65
Transcripts:ENSMUST00000157812
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL596127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000157812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,348,988 - 54,349,095 (+)Ensembl
GRCm38.p6 Ensembl1154,458,162 - 54,458,269 (+)Ensembl
RefSeq Acc Id: XR_004937311
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,348,990 - 54,349,095 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088437 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157812 ENTREZGENE
MGD MGI:5453975 ENTREZGENE
NCBI Gene LOC115487859 ENTREZGENE
PhenoGen Gm24198 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm24198  predicted gene, 24198  LOC115487859  U6 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115487859  U6 spliceosomal RNA  Gm24198  predicted gene, 24198  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm24198  predicted gene, 24198  LOC115487859  U6 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115487859  U6 spliceosomal RNA  Gm24198  predicted gene, 24198  Symbol and/or name change 5135510 APPROVED