Vmn1r228 (vomeronasal 1 receptor 228) - Rat Genome Database

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Gene: Vmn1r228 (vomeronasal 1 receptor 228) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r228
Name: vomeronasal 1 receptor 228
RGD ID: 1553467
MGI Page MGI
Description: Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be located in plasma membrane. Orthologous to several human genes including VN1R2 (vomeronasal 1 receptor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1r; V1re3; Vldr1; vomernasal 1 receptor Vmn1r228; vomeronasal 1 receptor, E3; vomeronasal receptor 1 D1; vomeronasal type 1 receptor E3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Pseudogenes: Vmn1r-ps141  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391720,996,321 - 20,997,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1720,995,246 - 21,006,419 (-)EnsemblGRCm39 Ensembl
GRCm381720,776,059 - 20,777,501 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1720,774,984 - 20,786,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv371720,913,023 - 20,914,465 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361720,480,756 - 20,482,198 (-)NCBIMGSCv36mm8
Celera1721,808,604 - 21,810,046 (-)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1711.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, etal., Nat Neurosci 2002 Feb;5(2):134-40.
Additional References at PubMed
PMID:12477932   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r228
48 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:59
Interacting mature miRNAs:61
Transcripts:ENSMUST00000072410
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
UniSTS:491564  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381720,776,190 - 20,777,388UniSTSGRCm38
MGSCv371720,913,154 - 20,914,352UniSTSGRCm37
Celera1721,808,735 - 21,809,933UniSTS
Cytogenetic Map17A3.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_134192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF394950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY065503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC134400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000072410   ⟹   ENSMUSP00000072243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,996,321 - 20,997,763 (-)Ensembl
GRCm38.p6 Ensembl1720,776,059 - 20,777,501 (-)Ensembl
Ensembl Acc Id: ENSMUST00000232812   ⟹   ENSMUSP00000156530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,995,246 - 21,006,419 (-)Ensembl
GRCm38.p6 Ensembl1720,774,984 - 20,786,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233164   ⟹   ENSMUSP00000156930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,995,246 - 21,006,419 (-)Ensembl
GRCm38.p6 Ensembl1720,774,984 - 20,786,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233186   ⟹   ENSMUSP00000156690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,995,246 - 21,006,419 (-)Ensembl
GRCm38.p6 Ensembl1720,774,984 - 20,786,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233605   ⟹   ENSMUSP00000156620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1720,995,246 - 21,006,419 (-)Ensembl
GRCm38.p6 Ensembl1720,774,984 - 20,786,157 (-)Ensembl
RefSeq Acc Id: NM_134192   ⟹   NP_598953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391720,996,321 - 20,997,763 (-)NCBI
GRCm381720,776,059 - 20,777,501 (-)ENTREZGENE
MGSCv371720,913,023 - 20,914,465 (-)RGD
Celera1721,808,604 - 21,810,046 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598953 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL47908 (Get FASTA)   NCBI Sequence Viewer  
  AAM69670 (Get FASTA)   NCBI Sequence Viewer  
  AEF00237 (Get FASTA)   NCBI Sequence Viewer  
  AEF00238 (Get FASTA)   NCBI Sequence Viewer  
  AEF00239 (Get FASTA)   NCBI Sequence Viewer  
  AEF00240 (Get FASTA)   NCBI Sequence Viewer  
  AEF00241 (Get FASTA)   NCBI Sequence Viewer  
  AEF00242 (Get FASTA)   NCBI Sequence Viewer  
  AEF00243 (Get FASTA)   NCBI Sequence Viewer  
  AEF00244 (Get FASTA)   NCBI Sequence Viewer  
  AEF00245 (Get FASTA)   NCBI Sequence Viewer  
  AEF00246 (Get FASTA)   NCBI Sequence Viewer  
  AEF00247 (Get FASTA)   NCBI Sequence Viewer  
  AEF00248 (Get FASTA)   NCBI Sequence Viewer  
  AEF00249 (Get FASTA)   NCBI Sequence Viewer  
  AEF00250 (Get FASTA)   NCBI Sequence Viewer  
  AEF00251 (Get FASTA)   NCBI Sequence Viewer  
  AEF00252 (Get FASTA)   NCBI Sequence Viewer  
  AEF00253 (Get FASTA)   NCBI Sequence Viewer  
  AEF00254 (Get FASTA)   NCBI Sequence Viewer  
  AEF00255 (Get FASTA)   NCBI Sequence Viewer  
  AEF00256 (Get FASTA)   NCBI Sequence Viewer  
  AEF00257 (Get FASTA)   NCBI Sequence Viewer  
  AEF00258 (Get FASTA)   NCBI Sequence Viewer  
  AEF00259 (Get FASTA)   NCBI Sequence Viewer  
  AEF00260 (Get FASTA)   NCBI Sequence Viewer  
  AEF00261 (Get FASTA)   NCBI Sequence Viewer  
  AEF00262 (Get FASTA)   NCBI Sequence Viewer  
  AEF00263 (Get FASTA)   NCBI Sequence Viewer  
  AEF00264 (Get FASTA)   NCBI Sequence Viewer  
  EDL38020 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000072243
  ENSMUSP00000072243.5
  ENSMUSP00000156530.2
  ENSMUSP00000156620.2
  ENSMUSP00000156690.2
  ENSMUSP00000156930.2
RefSeq Acc Id: NP_598953   ⟸   NM_134192
- UniProtKB: Q8R2A7 (UniProtKB/TrEMBL),   F6MBE7 (UniProtKB/TrEMBL),   F6MBF6 (UniProtKB/TrEMBL),   F6MBD3 (UniProtKB/TrEMBL),   F6MBF1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000072243   ⟸   ENSMUST00000072410
Ensembl Acc Id: ENSMUSP00000156620   ⟸   ENSMUST00000233605
Ensembl Acc Id: ENSMUSP00000156930   ⟸   ENSMUST00000233164
Ensembl Acc Id: ENSMUSP00000156690   ⟸   ENSMUST00000233186
Ensembl Acc Id: ENSMUSP00000156530   ⟸   ENSMUST00000232812
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R2A7-F1-model_v2 AlphaFold Q8R2A7 1-333 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159624 AgrOrtholog
Ensembl Genes ENSMUSG00000060245 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072410 ENTREZGENE
  ENSMUST00000072410.5 UniProtKB/TrEMBL
  ENSMUST00000232812.2 UniProtKB/TrEMBL
  ENSMUST00000233164.2 UniProtKB/TrEMBL
  ENSMUST00000233186.2 UniProtKB/TrEMBL
  ENSMUST00000233605.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:171226 UniProtKB/TrEMBL
MGD MGI:2159624 ENTREZGENE
NCBI Gene 171226 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r228 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt F6MBD3 ENTREZGENE
  F6MBE7 ENTREZGENE
  F6MBF1 ENTREZGENE
  F6MBF6 ENTREZGENE
  Q8R2A7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r228  vomeronasal 1 receptor 228  V1re3  vomeronasal 1 receptor, E3  Symbol and/or name change 5135510 APPROVED