Shq1 (SHQ1 homolog (S. cerevisiae)) - Rat Genome Database

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Gene: Shq1 (SHQ1 homolog (S. cerevisiae)) Mus musculus
Analyze
Symbol: Shq1
Name: SHQ1 homolog (S. cerevisiae)
RGD ID: 1552628
MGI Page MGI
Description: Predicted to enable unfolded protein binding activity. Acts upstream of or within with a positive effect on regulation of androgen receptor signaling pathway. Acts upstream of or within positive regulation of TORC1 signaling. Predicted to be located in cytosol. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in brain ventricular layer; cortical plate; olfactory epithelium; and submandibular gland primordium. Human ortholog(s) of this gene implicated in dystonia 35, childhood-onset. Orthologous to human SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810403P18Rik; Grim; Grim-1; protein SHQ1 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396100,548,772 - 100,648,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6100,545,217 - 100,648,118 (-)EnsemblGRCm39 Ensembl
GRCm386100,571,811 - 100,671,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6100,568,256 - 100,671,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv376100,523,076 - 100,621,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366100,539,181 - 100,637,239 (-)NCBIMGSCv36mm8
Celera6102,439,542 - 102,537,888 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Cajal body  (ISO)
cytoplasm  (IBA,ISO,ISS)
cytosol  (IEA,ISO)
nucleolus  (ISO)
nucleoplasm  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12819125   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:29057879   PMID:34321999  


Genomics

Comparative Map Data
Shq1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396100,548,772 - 100,648,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6100,545,217 - 100,648,118 (-)EnsemblGRCm39 Ensembl
GRCm386100,571,811 - 100,671,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6100,568,256 - 100,671,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv376100,523,076 - 100,621,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366100,539,181 - 100,637,239 (-)NCBIMGSCv36mm8
Celera6102,439,542 - 102,537,888 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map646.82NCBI
SHQ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38372,725,272 - 72,848,445 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl372,749,277 - 72,861,914 (-)EnsemblGRCh38hg38GRCh38
GRCh37372,798,428 - 72,897,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36372,881,118 - 72,980,288 (-)NCBINCBI36Build 36hg18NCBI36
Build 34372,881,119 - 72,980,288NCBI
Celera372,732,591 - 72,831,743 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef372,801,901 - 72,901,021 (-)NCBIHuRef
CHM1_1372,751,223 - 72,850,430 (-)NCBICHM1_1
T2T-CHM13v2.0372,766,887 - 72,890,317 (-)NCBIT2T-CHM13v2.0
Shq1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84134,741,190 - 134,861,960 (-)NCBIGRCr8
mRatBN7.24133,213,357 - 133,305,586 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4133,213,361 - 133,305,586 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4138,619,611 - 138,712,091 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04134,400,393 - 134,492,872 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04133,018,641 - 133,111,122 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04133,131,711 - 133,133,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.04133,037,515 - 133,127,183 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4133,037,014 - 133,131,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04197,520,935 - 197,610,595 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44135,478,202 - 135,571,298 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14135,716,517 - 135,821,308 (-)NCBI
Celera4122,058,308 - 122,150,570 (-)NCBICelera
Cytogenetic Map4q34NCBI
Shq1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542115,358,221 - 15,457,097 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542115,358,387 - 15,455,534 (+)NCBIChiLan1.0ChiLan1.0
SHQ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2272,707,607 - 72,808,233 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1372,712,395 - 72,812,355 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0372,692,338 - 72,791,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1374,619,864 - 74,718,948 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl374,619,864 - 74,718,948 (-)Ensemblpanpan1.1panPan2
SHQ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12019,304,839 - 19,406,662 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2019,304,934 - 19,405,950 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2019,283,815 - 19,385,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02019,340,247 - 19,442,546 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2019,340,246 - 19,442,541 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12019,027,021 - 19,128,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02019,369,028 - 19,470,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02019,440,373 - 19,542,402 (+)NCBIUU_Cfam_GSD_1.0
Shq1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,831,838 - 3,900,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,831,018 - 3,900,971 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,831,838 - 3,900,429 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHQ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1354,071,659 - 54,180,750 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11354,073,012 - 54,180,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21359,745,978 - 59,900,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHQ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12233,691,625 - 33,799,128 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2233,691,120 - 33,795,450 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041132,968,901 - 133,077,325 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shq1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247737,235,240 - 7,355,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247737,242,326 - 7,355,619 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Shq1
5771 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:272
Count of miRNA genes:118
Interacting mature miRNAs:126
Transcripts:ENSMUST00000089245, ENSMUST00000113312, ENSMUST00000162776, ENSMUST00000170667
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92584287111981699Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse

Markers in Region
03.MMHAP88FRA9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386100,668,081 - 100,668,256UniSTSGRCm38
MGSCv376100,618,075 - 100,618,250UniSTSGRCm37
Celera6102,534,812 - 102,534,987UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000089245   ⟹   ENSMUSP00000086656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6100,550,044 - 100,648,100 (-)Ensembl
GRCm38.p6 Ensembl6100,573,083 - 100,671,139 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113312   ⟹   ENSMUSP00000108938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6100,545,217 - 100,648,118 (-)Ensembl
GRCm38.p6 Ensembl6100,568,256 - 100,671,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6100,639,800 - 100,648,094 (-)Ensembl
GRCm38.p6 Ensembl6100,662,839 - 100,671,133 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170667   ⟹   ENSMUSP00000127797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6100,550,043 - 100,648,118 (-)Ensembl
GRCm38.p6 Ensembl6100,573,082 - 100,671,157 (-)Ensembl
RefSeq Acc Id: NM_181590   ⟹   NP_853621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396100,548,772 - 100,648,118 (-)NCBI
GRCm386100,571,811 - 100,671,157 (-)NCBI
MGSCv376100,523,076 - 100,621,151 (-)RGD
Celera6102,439,542 - 102,537,888 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506668   ⟹   XP_006506731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396100,550,042 - 100,648,135 (-)NCBI
GRCm386100,572,544 - 100,671,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006506669   ⟹   XP_006506732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396100,550,042 - 100,648,135 (-)NCBI
GRCm386100,572,544 - 100,671,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006506670   ⟹   XP_006506733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396100,550,042 - 100,648,135 (-)NCBI
GRCm386100,573,081 - 100,671,183 (-)NCBI
Sequence:
RefSeq Acc Id: NP_853621   ⟸   NM_181590
- UniProtKB: Q7TMX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506731   ⟸   XM_006506668
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006506732   ⟸   XM_006506669
- Peptide Label: isoform X2
- UniProtKB: Q7TMX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506733   ⟸   XM_006506670
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000108938   ⟸   ENSMUST00000113312
Ensembl Acc Id: ENSMUSP00000127797   ⟸   ENSMUST00000170667
Ensembl Acc Id: ENSMUSP00000086656   ⟸   ENSMUST00000089245
Protein Domains
CS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TMX5-F1-model_v2 AlphaFold Q7TMX5 1-569 view protein structure

Promoters
RGD ID:6839982
Promoter ID:MM_KWN:47054
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:NM_181590,   OTTMUST00000057428
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366100,620,781 - 100,621,281 (-)MPROMDB
RGD ID:6890548
Promoter ID:EPDNEW_M8725
Type:initiation region
Name:Shq1_1
Description:Mus musculus SHQ1 homolog , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386100,671,141 - 100,671,201EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919421 AgrOrtholog
Ensembl Genes ENSMUSG00000035378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000089245 ENTREZGENE
  ENSMUST00000089245.7 UniProtKB/Swiss-Prot
  ENSMUST00000113312.9 UniProtKB/Swiss-Prot
  ENSMUST00000170667 ENTREZGENE
  ENSMUST00000170667.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot
InterPro CS_dom UniProtKB/Swiss-Prot
  HSP20-like_chaperone UniProtKB/Swiss-Prot
  Shq1 UniProtKB/Swiss-Prot
  SHQ1-like_CS UniProtKB/Swiss-Prot
  Shq1_dom UniProtKB/Swiss-Prot
KEGG Report mmu:72171 UniProtKB/Swiss-Prot
MGD MGI:1919421 ENTREZGENE
NCBI Gene 72171 ENTREZGENE
PANTHER PROTEIN SHQ1 HOMOLOG UniProtKB/Swiss-Prot
  PTHR12967 UniProtKB/Swiss-Prot
Pfam SHQ1 UniProtKB/Swiss-Prot
  SHQ1-like_CS UniProtKB/Swiss-Prot
PhenoGen Shq1 PhenoGen
PROSITE PS51203 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot
UniProt Q7TMX5 ENTREZGENE, UniProtKB/Swiss-Prot