Gm23412 (predicted gene, 23412) - Rat Genome Database

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Gene: Gm23412 (predicted gene, 23412) Mus musculus
Analyze
Symbol: Gm23412
Name: predicted gene, 23412
RGD ID: 14999426
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,204,041 - 83,204,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,204,041 - 83,204,147 (-)EnsemblGRCm39 Ensembl
GRCm38483,285,804 - 83,285,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23412
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,204,041 - 83,204,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,204,041 - 83,204,147 (-)EnsemblGRCm39 Ensembl
GRCm38483,285,804 - 83,285,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
RNU6-547P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383172,703,124 - 172,703,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3172,703,124 - 172,703,225 (+)EnsemblGRCh38hg38GRCh38
GRCh373172,420,914 - 172,421,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q26.31NCBI
CHM1_13172,383,861 - 172,383,962 (+)NCBICHM1_1
T2T-CHM13v2.03175,488,876 - 175,488,977 (+)NCBIT2T-CHM13v2.0
LOC120098046
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,435,843 - 3,435,949 (-)NCBIGRCr8
mRatBN7.2173,430,216 - 3,430,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,430,216 - 3,430,322 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p14NCBI
LOC119874075
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1163,719,770 - 63,719,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01166,447,000 - 66,447,098 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,447,000 - 66,447,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,966,408 - 64,966,506 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,987,958 - 64,988,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,678,502 - 65,678,600 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm23412
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:117
Interacting mature miRNAs:119
Transcripts:ENSMUST00000083017
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8075244588769188Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX571885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)Ensembl
Ensembl Acc Id: ENSMUST00000093714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl483,204,041 - 83,204,147 (-)Ensembl
RefSeq Acc Id: XR_004942408
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,204,041 - 83,204,147 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096801 Ensembl
  ENSMUSG00000119168 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093714 ENTREZGENE
MGD MGI:5453189 ENTREZGENE
NCBI Gene Gm23412 ENTREZGENE
PhenoGen Gm23412 PhenoGen
RNAcentral URS00006606AD RNACentral