Gm23412 (predicted gene, 23412) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm23412 (predicted gene, 23412) Mus musculus
Analyze
Symbol: Gm23412
Name: predicted gene, 23412
RGD ID: 14999426
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,204,041 - 83,204,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,204,041 - 83,204,147 (-)EnsemblGRCm39 Ensembl
GRCm38483,285,804 - 83,285,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm23412
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,204,041 - 83,204,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,204,041 - 83,204,147 (-)EnsemblGRCm39 Ensembl
GRCm38483,285,804 - 83,285,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
RNU6-547P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383172,703,124 - 172,703,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3172,703,124 - 172,703,225 (+)EnsemblGRCh38hg38GRCh38
GRCh373172,420,914 - 172,421,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q26.31NCBI
CHM1_13172,383,861 - 172,383,962 (+)NCBICHM1_1
T2T-CHM13v2.03175,488,876 - 175,488,977 (+)NCBIT2T-CHM13v2.0
LOC120098046
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,435,843 - 3,435,949 (-)NCBIGRCr8
mRatBN7.2173,430,216 - 3,430,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,430,216 - 3,430,322 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p14NCBI
LOC119874075
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1163,719,770 - 63,719,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01166,447,000 - 66,447,098 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,447,000 - 66,447,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,966,408 - 64,966,506 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,987,958 - 64,988,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,678,502 - 65,678,600 (-)NCBIUU_Cfam_GSD_1.0

.

.
Variants in Gm23412
1 total Variants

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:117
Interacting mature miRNAs:119
Transcripts:ENSMUST00000083017
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 67 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse

1 to 10 of 67 rows





RefSeq Transcripts XR_004942408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX571885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)Ensembl
Ensembl Acc Id: ENSMUST00000093714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl483,204,041 - 83,204,147 (-)Ensembl
RefSeq Acc Id: XR_004942408
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,204,041 - 83,204,147 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000096801 Ensembl
  ENSMUSG00000119168 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093714 ENTREZGENE
MGD MGI:5453189 ENTREZGENE
NCBI Gene Gm23412 ENTREZGENE
PhenoGen Gm23412 PhenoGen
RNAcentral URS00006606AD RNACentral