LOC120098046 (U6 spliceosomal RNA) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC120098046 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120098046
Name: U6 spliceosomal RNA
RGD ID: 41187136
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,435,843 - 3,435,949 (-)NCBIGRCr8
mRatBN7.2173,430,216 - 3,430,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,430,216 - 3,430,322 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120098046
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8173,435,843 - 3,435,949 (-)NCBIGRCr8
mRatBN7.2173,430,216 - 3,430,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,430,216 - 3,430,322 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p14NCBI
RNU6-547P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383172,703,124 - 172,703,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3172,703,124 - 172,703,225 (+)EnsemblGRCh38hg38GRCh38
GRCh373172,420,914 - 172,421,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q26.31NCBI
CHM1_13172,383,861 - 172,383,962 (+)NCBICHM1_1
T2T-CHM13v2.03175,488,876 - 175,488,977 (+)NCBIT2T-CHM13v2.0
Gm23412
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,204,041 - 83,204,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,204,041 - 83,204,147 (-)EnsemblGRCm39 Ensembl
GRCm38483,285,804 - 83,285,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,285,804 - 83,285,910 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
LOC119874075
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1163,719,770 - 63,719,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01166,447,000 - 66,447,098 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,447,000 - 66,447,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11164,966,408 - 64,966,506 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01164,987,958 - 64,988,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,678,502 - 65,678,600 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005495976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000107616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl173,430,216 - 3,430,322 (-)Ensembl
RefSeq Acc Id: XR_005495976
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8173,435,843 - 3,435,949 (-)NCBI
mRatBN7.2173,430,216 - 3,430,322 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-10484 BioCyc
Ensembl Genes ENSRNOG00000067597 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000107616 ENTREZGENE
NCBI Gene LOC120098046 ENTREZGENE
PhenoGen LOC120098046 PhenoGen
RatGTEx ENSRNOG00000067597 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098046  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL