Gm25518 (predicted gene, 25518) - Rat Genome Database

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Gene: Gm25518 (predicted gene, 25518) Mus musculus
Analyze
Symbol: Gm25518
Name: predicted gene, 25518
RGD ID: 14996051
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,896,164 - 24,896,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,896,164 - 24,896,270 (-)EnsemblGRCm39 Ensembl
GRCm38225,006,152 - 25,006,258 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,006,152 - 25,006,258 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25518
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,896,164 - 24,896,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,896,164 - 24,896,270 (-)EnsemblGRCm39 Ensembl
GRCm38225,006,152 - 25,006,258 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,006,152 - 25,006,258 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
RNU6-985P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X137,687,891 - 137,687,994 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX137,687,891 - 137,687,994 (-)EnsemblGRCh38hg38GRCh38
GRCh37X136,770,050 - 136,770,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq26.3NCBI
T2T-CHM13v2.0X135,997,883 - 135,997,986 (-)NCBIT2T-CHM13v2.0
Rnu6-985
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8248,560,984 - 48,561,089 (+)NCBIGRCr8
mRatBN7.2246,827,938 - 46,828,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl246,827,938 - 46,828,043 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl247,297,085 - 47,297,190 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q14NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSMUST00000083864
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl224,896,164 - 24,896,270 (-)Ensembl
GRCm38.p6 Ensembl225,006,152 - 25,006,258 (-)Ensembl
RefSeq Acc Id: XR_004941250
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39224,896,164 - 24,896,270 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065798 Ensembl
  ENSMUSG00000118741 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083864 ENTREZGENE
MGD MGI:5455295 ENTREZGENE
NCBI Gene Gm25518 ENTREZGENE
PhenoGen Gm25518 PhenoGen