RNU6-985P (RNA, U6 small nuclear 985, pseudogene) - Rat Genome Database

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Gene: RNU6-985P (RNA, U6 small nuclear 985, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-985P
Name: RNA, U6 small nuclear 985, pseudogene
RGD ID: 10400219
HGNC Page HGNC:47948
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X137,687,891 - 137,687,994 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX137,687,891 - 137,687,994 (-)EnsemblGRCh38hg38GRCh38
GRCh37X136,770,050 - 136,770,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq26.3NCBI
T2T-CHM13v2.0X135,997,883 - 135,997,986 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-985P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X137,687,891 - 137,687,994 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX137,687,891 - 137,687,994 (-)EnsemblGRCh38hg38GRCh38
GRCh37X136,770,050 - 136,770,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq26.3NCBI
T2T-CHM13v2.0X135,997,883 - 135,997,986 (-)NCBIT2T-CHM13v2.0
Gm25518
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,896,164 - 24,896,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,896,164 - 24,896,270 (-)EnsemblGRCm39 Ensembl
GRCm38225,006,152 - 25,006,258 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,006,152 - 25,006,258 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
Rnu6-985
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8248,560,984 - 48,561,089 (+)NCBIGRCr8
mRatBN7.2246,827,938 - 46,828,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl246,827,938 - 46,828,043 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl247,297,085 - 47,297,190 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q14NCBI
LOC119870538
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha216,388,561 - 16,388,664 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0219,576,452 - 19,576,555 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl219,576,452 - 19,576,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,779,250 - 16,779,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,614,829 - 17,614,932 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0218,234,880 - 18,234,983 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:289
Count of miRNA genes:270
Interacting mature miRNAs:286
Transcripts:ENST00000410182
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
1 1 5 3 3 1 1 3 2 2 2 1 2

Sequence


Ensembl Acc Id: ENST00000410182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX137,687,891 - 137,687,994 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-985P COSMIC
Ensembl Genes ENSG00000222114 Ensembl, ENTREZGENE
GTEx ENSG00000222114 GTEx
HGNC ID HGNC:47948 ENTREZGENE
Human Proteome Map RNU6-985P Human Proteome Map
NCBI Gene RNU6-985P ENTREZGENE