PHYHIP (phytanoyl-CoA 2-hydroxylase interacting protein) - Rat Genome Database

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Gene: PHYHIP (phytanoyl-CoA 2-hydroxylase interacting protein) Sus scrofa
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Symbol: PHYHIP
Name: phytanoyl-CoA 2-hydroxylase interacting protein
RGD ID: 14298441
Description: ENCODES a protein that exhibits protein tyrosine kinase binding (inferred); INVOLVED IN protein localization (inferred); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phytanoyl-CoA hydroxylase-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,494,402 - 6,506,546 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,494,395 - 6,506,747 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,928,412 - 6,940,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PHYHIPPigConotruncal Cardiac Defects  ISOPHYHIP (Homo sapiens)8554872ClinVar Annotator: match by term: Conotruncal heart malformationsClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PHYHIPPigprotein localization involved_inIEAUniProtKB:Q92561 and ensembl:ENSP00000415491150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PHYHIPPigcytoplasm is_active_inIBAPANTHER:PTN001437819 more ...150520179 GO_CentralGO_REF:0000033
PHYHIPPigcytoplasm located_inIEAUniProtKB:Q92561 and ensembl:ENSP00000415491150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PHYHIPPigprotein binding enablesISOPR:O353869068941 PMID:10686344MGIPMID:10686344
PHYHIPPigprotein binding enablesISOPR:Q3UHD19068941 PMID:11245925MGIPMID:11245925
PHYHIPPigprotein binding enablesISOUniProtKB:Q9NXK69068941 PMID:28514442 and PMID:33961781IntActPMID:28514442 and PMID:33961781
PHYHIPPigprotein tyrosine kinase binding enablesIEAUniProtKB:Q92561 and ensembl:ENSP00000415491150520179 EnsemblGO_REF:0000107

PMID:22301074   PMID:30032202  



PHYHIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,494,402 - 6,506,546 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,494,395 - 6,506,747 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,928,412 - 6,940,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHYHIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,219,703 - 22,232,099 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,219,703 - 22,232,101 (-)EnsemblGRCh38hg38GRCh38
GRCh37822,077,216 - 22,089,612 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,133,161 - 22,145,796 (-)NCBINCBI36Build 36hg18NCBI36
Build 34822,133,180 - 22,145,549NCBI
Celera821,039,919 - 21,052,558 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,619,408 - 20,632,043 (-)NCBIHuRef
CHM1_1822,278,877 - 22,291,513 (-)NCBICHM1_1
T2T-CHM13v2.0822,493,657 - 22,506,054 (-)NCBIT2T-CHM13v2.0
Phyhip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,694,957 - 70,706,266 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,694,916 - 70,706,272 (+)EnsemblGRCm39 Ensembl
GRCm381470,457,517 - 70,468,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,457,476 - 70,468,832 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,857,324 - 70,868,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,189,350 - 69,203,912 (+)NCBIMGSCv36mm8
Celera1467,999,012 - 68,010,249 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.32NCBI
Phyhip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,943,670 - 51,954,921 (+)NCBIGRCr8
mRatBN7.21545,533,974 - 45,545,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,533,974 - 45,545,221 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,651,845 - 49,663,092 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,763,358 - 50,774,607 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,622,643 - 47,633,888 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,148,737 - 52,160,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,767,442 - 52,778,687 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,148,379 - 52,160,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,872,254 - 55,883,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,860,503 - 50,871,752 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,876,282 - 50,887,532 (+)NCBI
Celera1545,213,030 - 45,224,263 (+)NCBICelera
Cytogenetic Map15p11NCBI
Phyhip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,695,638 - 45,710,187 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,698,936 - 45,710,921 (-)NCBIChiLan1.0ChiLan1.0
PHYHIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,721,446 - 40,734,078 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,446,632 - 16,459,269 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,464,544 - 21,477,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,404,176 - 18,417,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,404,176 - 18,417,035 (-)Ensemblpanpan1.1panPan2
PHYHIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,025,823 - 35,038,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,026,692 - 35,037,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,616,891 - 35,628,218 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,238,623 - 35,249,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,238,623 - 35,249,950 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,184,131 - 35,195,455 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,038,662 - 35,049,983 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,194,169 - 35,205,491 (+)NCBIUU_Cfam_GSD_1.0
Phyhip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,529,844 - 12,541,119 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,029,347 - 6,040,758 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365556,029,393 - 6,040,622 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHYHIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,289,215 - 20,301,495 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,289,512 - 20,297,577 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605221,934,570 - 21,946,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phyhip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,792,745 - 17,804,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,793,805 - 17,804,637 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PHYHIP
267 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
3 1 23 3 2 4 3 23 4 1



Ensembl Acc Id: ENSSSCT00000010547   ⟹   ENSSSCP00000010271
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,494,402 - 6,506,546 (-)Ensembl
RefSeq Acc Id: XM_001927910   ⟹   XP_001927945
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,494,395 - 6,506,747 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001927945   ⟸   XM_001927910
- UniProtKB: F1RMB1 (UniProtKB/TrEMBL),   A0A4X1VG31 (UniProtKB/TrEMBL),   A0A8D0RGG2 (UniProtKB/TrEMBL),   A0A8D0JFU9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010271   ⟸   ENSSSCT00000010547
Fibronectin type-III



1 to 40 of 48 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000009621 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015051331 UniProtKB/TrEMBL
  ENSSSCG00025027907 UniProtKB/TrEMBL
  ENSSSCG00030042188 UniProtKB/TrEMBL
  ENSSSCG00035078186 UniProtKB/TrEMBL
  ENSSSCG00040030456 UniProtKB/TrEMBL
  ENSSSCG00045014810 UniProtKB/TrEMBL
  ENSSSCG00050076182 UniProtKB/TrEMBL
  ENSSSCG00055022544 UniProtKB/TrEMBL
  ENSSSCG00060006419 UniProtKB/TrEMBL
  ENSSSCG00065004368 UniProtKB/TrEMBL
  ENSSSCG00070024165 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010547 ENTREZGENE
  ENSSSCT00000010547.5 UniProtKB/TrEMBL
  ENSSSCT00015068420.1 UniProtKB/TrEMBL
  ENSSSCT00025037835.1 UniProtKB/TrEMBL
  ENSSSCT00025037912.1 UniProtKB/TrEMBL
  ENSSSCT00030058714.1 UniProtKB/TrEMBL
  ENSSSCT00035106693.1 UniProtKB/TrEMBL
  ENSSSCT00040041022.1 UniProtKB/TrEMBL
  ENSSSCT00040041074.1 UniProtKB/TrEMBL
  ENSSSCT00045025174.1 UniProtKB/TrEMBL
  ENSSSCT00050104594.1 UniProtKB/TrEMBL
  ENSSSCT00055044282.1 UniProtKB/TrEMBL
  ENSSSCT00055044323.1 UniProtKB/TrEMBL
  ENSSSCT00055044372.1 UniProtKB/TrEMBL
  ENSSSCT00060008147.1 UniProtKB/TrEMBL
  ENSSSCT00065005998.1 UniProtKB/TrEMBL
  ENSSSCT00070048244.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  PHYHIP/PHYHIPL UniProtKB/TrEMBL
  PHYIP/PHIPL_C UniProtKB/TrEMBL
KEGG Report ssc:100155255 UniProtKB/TrEMBL
NCBI Gene PHYHIP ENTREZGENE
PANTHER PHYTANOYL-COA HYDROXYLASE-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR15698 UniProtKB/TrEMBL
Pfam PHYHIP_C UniProtKB/TrEMBL
1 to 40 of 48 rows