RBM6 (RNA binding motif protein 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RBM6 (RNA binding motif protein 6) Sus scrofa
Analyze
Symbol: RBM6
Name: RNA binding motif protein 6
RGD ID: 14271328
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,444,963 - 32,569,815 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,444,944 - 32,569,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,625,690 - 35,749,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM6PigAicardi-Goutieres Syndrome 1  ISORBM6 (Homo sapiens)8554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 1ClinVarPMID:16845398 and PMID:28492532
RBM6Pigdevelopmental and epileptic encephalopathy  ISORBM6 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:24358150 and PMID:28492532
RBM6Pigearly infantile epileptic encephalopathy  ISORBM6 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:24358150 and PMID:28492532
RBM6Pigprimary ciliary dyskinesia  ISORBM6 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary ciliary dyskinesiaClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM6PigmRNA splicing, via spliceosome involved_inIBAPANTHER:PTN000359040 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM6Pignucleus is_active_inIBAMGI:1338037 more ...150520179 GO_CentralGO_REF:0000033
RBM6Pignucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
RBM6Pignucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
RBM6Pignucleus located_inIEAUniProtKB:S4R1W5 and ensembl:ENSMUSP00000138400150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBM6Pignucleic acid binding enablesIEAInterPro:IPR000467 and InterPro:IPR035979150520179 InterProGO_REF:0000002
RBM6Pigprotein binding enablesISOUniProtKB:P26641-29068941 PMID:25416956IntActPMID:25416956
RBM6Pigprotein binding enablesISOUniProtKB:Q155559068941 PMID:32296183IntActPMID:32296183
RBM6PigRNA binding enablesIBAPANTHER:PTN000359040 more ...150520179 GO_CentralGO_REF:0000033
RBM6PigRNA binding enablesIEAUniProtKB-KW:KW-0694150520179 UniProtGO_REF:0000043
RBM6PigRNA binding enablesIEAUniRule:UR000414619150520179 UniProtGO_REF:0000104
RBM6PigRNA binding enablesIEAInterPro:IPR000504 more ...150520179 InterProGO_REF:0000002

PMID:22301074   PMID:30032202  



RBM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,444,963 - 32,569,815 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,444,944 - 32,569,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,625,690 - 35,749,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,940,150 - 50,077,249 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,940,007 - 50,100,045 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,977,583 - 50,114,682 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,952,596 - 50,089,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,952,595 - 50,089,685NCBI
Celera349,943,716 - 50,087,548 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,034,632 - 50,170,894 (+)NCBIHuRef
CHM1_1349,929,564 - 50,066,750 (+)NCBICHM1_1
T2T-CHM13v2.0349,969,226 - 50,106,392 (+)NCBIT2T-CHM13v2.0
Rbm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,650,758 - 107,751,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,650,758 - 107,750,436 (-)EnsemblGRCm39 Ensembl
GRCm389107,773,559 - 107,873,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,773,559 - 107,873,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,675,890 - 107,775,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,631,664 - 107,730,808 (-)NCBIMGSCv36mm8
Celera9107,381,354 - 107,481,030 (-)NCBICelera
Cytogenetic Map9F1NCBI
Rbm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,327,607 - 117,431,397 (-)NCBIGRCr8
mRatBN7.28108,452,687 - 108,552,783 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,452,687 - 108,552,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,079,496 - 114,179,508 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,278,658 - 112,378,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,121,434 - 110,221,461 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,535,403 - 116,635,851 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,535,403 - 116,635,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,890,040 - 115,989,943 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,027,975 - 113,128,713 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8107,759,022 - 107,858,711 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rbm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,811,794 - 1,916,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,811,794 - 1,914,551 (+)NCBIChiLan1.0ChiLan1.0
RBM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,926,494 - 50,062,256 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,931,303 - 50,067,031 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,872,120 - 50,007,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,135,452 - 51,243,169 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,135,198 - 51,243,169 (+)Ensemblpanpan1.1panPan2
RBM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,235,301 - 39,359,784 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,235,421 - 39,334,107 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,156,312 - 39,280,673 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,591,976 - 39,716,799 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,591,976 - 39,716,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,959,144 - 39,083,726 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,363,478 - 39,488,199 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,643,102 - 39,767,491 (-)NCBIUU_Cfam_GSD_1.0
Rbm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,774,330 - 64,874,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,534,657 - 1,635,071 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,534,816 - 1,635,012 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,343,260 - 11,462,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,343,214 - 11,461,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,528,101 - 155,651,928 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,840,456 - 3,951,643 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in RBM6
1783 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000012472   ⟹   ENSSSCP00000012147
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1332,444,963 - 32,569,699 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000036734   ⟹   ENSSSCP00000039047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1332,445,018 - 32,569,815 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000057165   ⟹   ENSSSCP00000046622
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1332,506,405 - 32,569,699 (+)Ensembl
RefSeq Acc Id: XM_003483187   ⟹   XP_003483235
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,944 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005669583   ⟹   XP_005669640
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,944 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981726   ⟹   XP_013837180
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,958 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981727   ⟹   XP_013837181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,958 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981728   ⟹   XP_013837182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,478,045 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068796   ⟹   XP_020924455
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,963 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068797   ⟹   XP_020924456
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,963 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068798   ⟹   XP_020924457
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,956 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068799   ⟹   XP_020924458
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,958 - 32,569,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068800   ⟹   XP_020924459
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,444,958 - 32,569,818 (+)NCBI
Sequence:
1 to 30 of 49 rows
Protein RefSeqs XP_003483235 (Get FASTA)   NCBI Sequence Viewer  
  XP_005669640 (Get FASTA)   NCBI Sequence Viewer  
  XP_013837180 (Get FASTA)   NCBI Sequence Viewer  
  XP_013837181 (Get FASTA)   NCBI Sequence Viewer  
  XP_013837182 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924455 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924456 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924457 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924458 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924459 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012147
  ENSSSCP00000012147.3
  ENSSSCP00000039047
  ENSSSCP00000039047.2
  ENSSSCP00000046622
  ENSSSCP00000046622.3
  ENSSSCP00015041798.1
  ENSSSCP00015041879.1
  ENSSSCP00025046124.1
  ENSSSCP00025046167.1
  ENSSSCP00025046248.1
  ENSSSCP00030033488.1
  ENSSSCP00030033501.1
  ENSSSCP00030033533.1
  ENSSSCP00030033557.1
  ENSSSCP00035027677.1
  ENSSSCP00035027680.1
  ENSSSCP00035027684.1
  ENSSSCP00035027687.1
  ENSSSCP00040044064.1
1 to 30 of 49 rows
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: XP_005669640   ⟸   XM_005669583
- Peptide Label: isoform X1
- UniProtKB: F1SPQ9 (UniProtKB/TrEMBL),   A0A4X1SM18 (UniProtKB/TrEMBL),   A0A481B197 (UniProtKB/TrEMBL),   A0A8D1FUV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003483235   ⟸   XM_003483187
- Peptide Label: isoform X1
- UniProtKB: F1SPQ9 (UniProtKB/TrEMBL),   A0A4X1SM18 (UniProtKB/TrEMBL),   A0A481B197 (UniProtKB/TrEMBL),   A0A8D1FUV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924457   ⟸   XM_021068798
- Peptide Label: isoform X3
- UniProtKB: A0A287ART6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924459   ⟸   XM_021068800
- Peptide Label: isoform X4
- UniProtKB: A0A287ART6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924458   ⟸   XM_021068799
- Peptide Label: isoform X4
- UniProtKB: A0A287ART6 (UniProtKB/TrEMBL)
- Sequence:
G-patch   RRM



1 to 40 of 87 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000011394 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015074960 UniProtKB/TrEMBL
  ENSSSCG00025075374 UniProtKB/TrEMBL
  ENSSSCG00030052561 UniProtKB/TrEMBL
  ENSSSCG00035051296 UniProtKB/TrEMBL
  ENSSSCG00040071716 UniProtKB/TrEMBL
  ENSSSCG00045018334 UniProtKB/TrEMBL
  ENSSSCG00050045201 UniProtKB/TrEMBL
  ENSSSCG00055004689 UniProtKB/TrEMBL
  ENSSSCG00060060464 UniProtKB/TrEMBL
  ENSSSCG00065073376 UniProtKB/TrEMBL
  ENSSSCG00070002284 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012472 ENTREZGENE
  ENSSSCT00000012472.5 UniProtKB/TrEMBL
  ENSSSCT00000036734 ENTREZGENE
  ENSSSCT00000036734.3 UniProtKB/TrEMBL
  ENSSSCT00000057165 ENTREZGENE
  ENSSSCT00000057165.3 UniProtKB/TrEMBL
  ENSSSCT00015100922.1 UniProtKB/TrEMBL
  ENSSSCT00015101133.1 UniProtKB/TrEMBL
  ENSSSCT00025103958.1 UniProtKB/TrEMBL
  ENSSSCT00025104035.1 UniProtKB/TrEMBL
  ENSSSCT00025104154.1 UniProtKB/TrEMBL
  ENSSSCT00030073280.1 UniProtKB/TrEMBL
  ENSSSCT00030073303.1 UniProtKB/TrEMBL
  ENSSSCT00030073346.1 UniProtKB/TrEMBL
  ENSSSCT00030073384.1 UniProtKB/TrEMBL
  ENSSSCT00035068326.1 UniProtKB/TrEMBL
  ENSSSCT00035068330.1 UniProtKB/TrEMBL
  ENSSSCT00035068343.1 UniProtKB/TrEMBL
  ENSSSCT00035068351.1 UniProtKB/TrEMBL
  ENSSSCT00040098590.1 UniProtKB/TrEMBL
  ENSSSCT00040098750.1 UniProtKB/TrEMBL
  ENSSSCT00040098923.1 UniProtKB/TrEMBL
  ENSSSCT00040099190.1 UniProtKB/TrEMBL
  ENSSSCT00045031235.1 UniProtKB/TrEMBL
  ENSSSCT00045031432.1 UniProtKB/TrEMBL
  ENSSSCT00045031709.1 UniProtKB/TrEMBL
  ENSSSCT00050061528.1 UniProtKB/TrEMBL
  ENSSSCT00050061532.1 UniProtKB/TrEMBL
1 to 40 of 87 rows