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Gene: ATL1 (atlastin GTPase 1) Sus scrofa

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Symbol:

ATL1

Name:

atlastin GTPase 1

RGD ID:

14249922

Description:

ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); identical protein binding (inferred); INVOLVED IN axonogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); hereditary sensory neuropathy type 1D (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog); Golgi cis cisterna (ortholog); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

atlastin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATL1 (atlastin GTPase 1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Atl1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Atl1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atl1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATL1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATL1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atl1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATL1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atl1 (atlastin GTPase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	180,299,256 - 180,405,837 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	180,299,434 - 180,407,003 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	200,606,921 - 200,696,179 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease (ISO)

genetic disease (ISO)

hereditary sensory neuropathy type 1D (ISO)

hereditary spastic paraplegia (ISO)

hereditary spastic paraplegia 10 (ISO)

hereditary spastic paraplegia 3A (ISO)

Lingual Thyroids (ISO)

Nervous System Malformations (ISO)

Noonan syndrome 9 (ISO)

paraplegia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (ISO)

endoplasmic reticulum organization (IBA,IEA)

endoplasmic reticulum tubular network membrane organization (IEA)

protein homooligomerization (IBA,IEA)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (ISO)

endoplasmic reticulum tubular network (IEA)

endoplasmic reticulum tubular network membrane (IEA)

Golgi apparatus (ISO)

Golgi cis cisterna (ISO)

membrane (IEA)

Molecular Function

GTP binding (IBA,IEA)

GTPase activity (IBA,IEA)

identical protein binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ATL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	180,299,256 - 180,405,837 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	180,299,434 - 180,407,003 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	200,606,921 - 200,696,179 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	50,533,082 - 50,633,068 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	50,532,509 - 50,634,017 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	50,999,800 - 51,099,786 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	50,096,500 - 50,169,141 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	50,096,513 - 50,169,532	NCBI
Celera	14	30,866,848 - 30,966,813 (+)	NCBI		Celera
Cytogenetic Map	14	q22.1	NCBI
HuRef	14	31,125,093 - 31,225,360 (+)	NCBI		HuRef
CHM1_1	14	50,938,361 - 51,038,328 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	44,738,771 - 44,839,213 (+)	NCBI		T2T-CHM13v2.0

Atl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	69,939,879 - 70,010,859 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	69,939,388 - 70,013,191 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	69,893,105 - 69,964,085 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	69,892,614 - 69,966,417 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	70,994,092 - 71,065,072 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	70,811,874 - 70,882,636 (+)	NCBI		MGSCv36	mm8
Celera	12	70,995,246 - 71,065,809 (+)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	28.94	NCBI

Atl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	94,113,149 - 94,210,955 (+)	NCBI		GRCr8
mRatBN7.2	6	88,377,168 - 88,475,242 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	88,377,239 - 88,475,204 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	88,776,280 - 88,874,678 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	89,075,744 - 89,174,141 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	88,515,269 - 88,613,657 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	92,229,764 - 92,370,428 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	92,229,686 - 92,370,421 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	101,678,899 - 101,819,542 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	91,979,260 - 92,077,664 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	91,982,715 - 92,081,117 (+)	NCBI
Celera	6	86,872,333 - 86,970,392 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Atl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	12,222,591 - 12,301,990 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	12,222,591 - 12,301,990 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	51,671,566 - 51,771,723 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	50,888,068 - 50,988,225 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	31,122,551 - 31,222,537 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	49,452,923 - 49,524,726 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	49,476,733 - 49,524,392 (+)	Ensembl	panpan1.1		panPan2

ATL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	26,959,697 - 27,034,190 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	26,959,749 - 27,120,114 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	26,713,517 - 26,787,530 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	27,137,404 - 27,211,811 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	27,137,277 - 27,298,300 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	26,792,383 - 26,867,330 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	26,866,362 - 26,940,439 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	27,183,761 - 27,284,853 (+)	NCBI		UU_Cfam_GSD_1.0

Atl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	59,138,464 - 59,207,351 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	14,984,336 - 15,040,597 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	14,984,761 - 15,053,188 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	27,631,488 - 27,709,669 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	27,631,632 - 27,708,962 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	15,920,966 - 16,020,240 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	18,283,234 - 18,362,693 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	18,283,372 - 18,362,644 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ATL1
1815 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013993393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013993394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU074392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000005535 ⟹ ENSSSCP00000005397

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	180,299,481 - 180,405,837 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000005536 ⟹ ENSSSCP00000005398

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	180,299,481 - 180,405,580 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000089833 ⟹ ENSSSCP00000070861

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	180,353,973 - 180,405,837 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000090817 ⟹ ENSSSCP00000065022

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	180,299,256 - 180,404,836 (+)	Ensembl

RefSeq Acc Id:

XM_013993393 ⟹ XP_013848847

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	180,316,433 - 180,407,003 (+)	NCBI

Sequence:

show sequence

GAGGGTGTGACGCTGGTATTTGTTTGAACTAGGGCTTGTGATGCTGAGCTTGGTTCATCCGCTT
TCTCCTCCCTTCTCCCCACTCCTTCGCACCAGCGCCACAGCAACATCCTCAGAGCCTGTGCGAA
CTGCGCCCAGCGCGGGCACAGAGCCTCCCACCTCCAGGAACCTACGCCCGGGAGAAGAGCGAGC
GCAGTGACAGCGCCTCGCCGCCACCAGTCCCCAGACCACCATGGCGAAGAGCCGCAAGGACAGA
AACAGTTGGGGTGGGTTTTCAGAAAAGGGATATGAATGGAGCTCAGAAGAGGAAGAGTCAGTGA
AAAAGGCAGGACCAGTCCAAGTCCTCATTGTCAAAGATGACCATTCCTTTGAATTAGATGAAAC
TGCACTAAATCGGATCCTTCTTTCGGAGGCTGTCAGGGACAAGGAGGTCGTTGCAGTATCTGTG
GCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGATTTCATGTTGAGATACATGTACAACC
AGGAGTCTGTTGATTGGGTTGGAGATTACAATGAGCCATTGACTGGTTTTTCATGGAGAGGTGG
ATCTGAACGAGAGACCACAGGAATCCAGATATGGAGTGAAGTCTTCCTTATCAATAAACCTGAT
GGTAAAAAGGTTGCAGTGCTGTTGATGGATACTCAGGGAACCTTTGACAGTCAGTCAACTTTGA
GAGATTCGGCCACAGTATTTGCCCTTAGCACAATGATCAGCTCAATACAGGTATATAACTTATC
ACAAAATGTCCAGGAGGATGATCTTCAGCACCTTCAGCTTTTCACTGAGTATGGCAGACTGGCA
ATGGAGGAAACATTCCTGAAGCCATTTCAGAGTCTGATATTTCTTGTTCGAGATTGGAGTTTCC
CATACGAATTTTCATATGGAGCTGACGGGGGCTCCAAATTCTTGGAAAAACGCCTCAAGGTCTC
AGGGAACCAGCATGAAGAACTACAGAATGTTCGAAAACACATACATTCCTGTTTCACCAAAATT
TCCTGTTTTCTGCTACCTCATCCTGGCTTAAAAGTAGCTACCAATCCAAACTTCGATGGAAAAC
TGAAAGAAATAGATGAAGAATTCATCAAAAACTTGAAAATACTCATTCCTTGGCTACTTAGTCC
TGAGAGCCTAGATATTAAAGAAATCAATGGGAACAAAATCACTTGCCGAGGTCTGGTGGAGTAC
TTCAAGGCTTATATAAAGATTTATCAAGGTGAAGAATTACCACATCCCAAATCCATGTTACAGG
CCACAGCAGAAGCTAACAATTTAGCAGCCGTGGCAACTGCCAAGGATACATACAATAAAAAAAT
GGAAGAGATTTGTGGTGGTGACAAACCATTTCTGGCACCTAATGACCTGCAGACCAAACATCTG
GAGCTTAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGAGAGGAATTTA
GCCGGCGTTACCTCCAGCAGTTGGAGAGTGAAATAGATGAACTTTACATCCAGTACATCAAGCA
CAATGATAGCAAAAACATCTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGTTGTCATCTTT
ATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTCTGCA
ATATGATAATGGGACTGACCCTCATCACTCTGTGCACCTGGGCATACATCCGGTACTCCGGAGA
ATACCGAGAGCTGGGTGCCGTAATAGACCAAGTGGCTGCAGCCTTATGGGACCAGGGAAGTACA
AATGAGGCTTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACATTTGTATCATCAAGCTT
TTCCTGCACCAAAGTCAGAATCTACCGAACAATCAGAAAAGAAGAAAATTTAATCCAAACTTTA
AAGATACAGGTGCATGACCAAAATGTCAGTTAAATATTGTTTTATGTCTCCATGCAAACATTCA
AAGTGCTTCCATCAGAACAGAGTAAAACACCAAGCACCTCTGAAGACTGCAAAAGGGTTTTAGT
TCTTTTACTTCAGTGTTTAATAAGCAGATGTATATATGCATGGTTATATCATTTGGTTAACATG
TACAGTTTCCTGATTTAGTCTTCAAATATGCTGTTATAATTTAAAGAGTTTGTCTATTTATGGT
AACAGTACCTGTGTTCTGCTTGAATTTACTAAATTCTAATATCAGGTTATAGTTAAACCATGTA
GTAATACTACTCCACATTTGGATATGCTCATTTTATTTCTATAGAAGAATTTTTAAATTATTCA
CATTGTCATTTGTTAAAGAATTGCATAACTCCCGTAGGCTTGATTCAACCTATACCATCTTACA
TATCCCATTGGCTTTTATTTTAAAAGACATTTAAAAGAGCTTTTCAGTTGCTTTATCAAAAACT
ATATATTGCTTCTTCTATATTATGATTTAATATAGCATATAAACCTCTTGATCAAAAAATGCAC
AAAAAAATCACTCTGTATATGTATTTGAGTTTCACTGCATTGTATATTTTTTCATTTGGTACAC
AGAGAAATGTATTCATTATAGGTTTATTCTTTTAACATGTGAACTATTATTAAAGTTTACTCTG
GTTCCTAAGATTAAAAACAACTGAATTTGGAAATGCTTGGGAGGCACTGATAGAGAAGGATGGT
TTTGCTCTTTTTTAAAAAAATTTCAAAATGCATTTTCTTTAATGTTGACACCATTACAAATTTA
GATATCCATTTTAAAAGGTACCCTTTTAAGTACCTTCCAGTTCTTTTAAACCAGTGATTCTGTA
TTGTCTTTCTAAGTACTAAAATCTGTGGTGGAATTTCATTGAGTGTACTTTTTAGAGAAAAAAA
AAAAAGTGATGTCACCTATCTGAGAGCTCTAAAACACTAATTTCTACCTTTCTTAGAAAAGGCT
AAATTGTAATTAAATTAAGCAGTAATATTAAGTAAGGAGTAAAGAATGATTAAGATGGAAGAGT
GTGTGAGAATTCCTAAGATATATAAACTCCTATCTTAAAAAAAGGCTAGTCACATGCCTGCAAA
ATAACTTTTCTCACTGATAAAATTCTGCTAGCCCATTTTCATTTTCCAGTACCCCTTTCATTAT
ATACTCTTTCCTTTGTCTCTAGGCCTTCTGAATAGAAAAATCAAATATTTCTAAGCACTATGCA
CAAAACATGGACTCAAATGCAACACATTTAGTTTCCACAAAAATATATTTAATAAGCTTGTTAT
ATAAAATCAAACATTTAACACTTTCAACATTTTATCAATAATTCAAACTTACTGGTATCTAAAT
CTGGGAGTTTATATTTTGGAAGGTAACCTAAATGAAGAATTTATTTACATATTTACAACACATG
TAAATATAACTAGAGCTATTTCAACAAGTGTTGAAATTCACAGAATTTTGTAGGCTACATGTGC
CATAAATTTGCCTGCAATCAAATGTACTATGCTAATTATGAACAATGTCTTAATAACTACTAAA
CCAAAAGGGAAAAAATGAGGGGGAAATACTGGGGTTTTAAAGTTGTGTGACAAACTCTTACAAG
ATAAAAGATCTGTAAATCAATTTAATGACCAAGATTTCTTAATGAATCCCTGATTGTCATTTTT
GGCAGCTCAACCCAGTCCATCAGGATGGCAACGTGCTATGCTGTTGGGAACCCTCCAGTGTCTC
ATCAGAATCACGTTACTAAATGCCATAAGAGCCCTGGCACAAAGTAAGGAAGTTATATTAGGAA
CTGTGACTGCTGTACACACCTTCCCACACAGGCTTGGGCCTTATGCCTAATTTAATTCCTGAAA
GATTACAGGTCCTTCACCCTTTCAGACCAAAAAATACTTTTTCAACATGTTTTAAAAGGGTTCT
TTACATTTGGGGGCAGAGGAACTTCATACATTATATACAAAAATTTATCACCCAAATCCCATTT
TATGTTTTGAATGGTAATATTTAAACCATCCAATTCCAGGCAATATTCCACATGAAAGCAGTAG
ACATCTTTTTTTAAATACTGCATAGGTTATCTCTCTGCTTTTTT

hide sequence

RefSeq Acc Id:

XM_013993394 ⟹ XP_013848848

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	180,316,451 - 180,404,870 (+)	NCBI

Sequence:

show sequence

TTTGTTTGAACTAGGGCTTGTGATGCTGAGCTTGGTTCATCCGCTTTCTCCTCCCTTCTCCCCA
CTCCTTCGCACCAGCGCCACAGCAACATCCTCAGAGCCTGTGCGAACTGCGCCCAGCGCGGGCA
CAGAGCCTCCCACCTCCAGGAACCTACGCCCGGGAGAAGAGCGAGCGCAGTGACAGCGCCTCGC
CGCCACCAGTCCCCAGACCACCATGGCGAAGAGCCGCAAGGACAGAAACAGTTGGGGTGGGTTT
TCAGAAAAGGGATATGAATGGAGCTCAGAAGAGGAAGAGTCAGTGAAAAAGGCAGGACCAGTCC
AAGTCCTCATTGTCAAAGATGACCATTCCTTTGAATTAGATGAAACTGCACTAAATCGGATCCT
TCTTTCGGAGGCTGTCAGGGACAAGGAGGTCGTTGCAGTATCTGTGGCTGGAGCATTTAGAAAA
GGAAAATCATTCCTGATGGATTTCATGTTGAGATACATGTACAACCAGGAGTCTGTTGATTGGG
TTGGAGATTACAATGAGCCATTGACTGGTTTTTCATGGAGAGGTGGATCTGAACGAGAGACCAC
AGGAATCCAGATATGGAGTGAAGTCTTCCTTATCAATAAACCTGATGGTAAAAAGGTTGCAGTG
CTGTTGATGGATACTCAGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTAT
TTGCCCTTAGCACAATGATCAGCTCAATACAGGTATATAACTTATCACAAAATGTCCAGGAGGA
TGATCTTCAGCACCTTCAGCTTTTCACTGAGTATGGCAGACTGGCAATGGAGGAAACATTCCTG
AAGCCATTTCAGAGTCTGATATTTCTTGTTCGAGATTGGAGTTTCCCATACGAATTTTCATATG
GAGCTGACGGGGGCTCCAAATTCTTGGAAAAACGCCTCAAGGTCTCAGGGAACCAGCATGAAGA
ACTACAGAATGTTCGAAAACACATACATTCCTGTTTCACCAAAATTTCCTGTTTTCTGCTACCT
CATCCTGGCTTAAAAGTAGCTACCAATCCAAACTTCGATGGAAAACTGAAAGAAATAGATGAAG
AATTCATCAAAAACTTGAAAATACTCATTCCTTGGCTACTTAGTCCTGAGAGCCTAGATATTAA
AGAAATCAATGGGAACAAAATCACTTGCCGAGGTCTGGTGGAGTACTTCAAGGCTTATATAAAG
ATTTATCAAGGTGAAGAATTACCACATCCCAAATCCATGTTACAGGCCACAGCAGAAGCTAACA
ATTTAGCAGCCGTGGCAACTGCCAAGGATACATACAATAAAAAAATGGAAGAGATTTGTGGTGG
TGACAAACCATTTCTGGCACCTAATGACCTGCAGACCAAACATCTGGAGCTTAAGGAAGAATCT
GTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGAGAGGAATTTAGCCGGCGTTACCTCCAGC
AGTTGGAGAGTGAAATAGATGAACTTTACATCCAGTACATCAAGCACAATGATAGCAAAAACAT
CTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGTTGTCATCTTTATCACATATGTGATTGCT
GGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTCTGCAATATGATAATGGGACTGA
CCCTCATCACTCTGTGCACCTGGGCATACATCCGGTACTCCGGAGAATACCGAGAGCTGGGTGC
CGTAATAGACCAAGTGGCTGCAGCCTTATGGGACCAGGCTTTATACAAGCTTTACAGTGCAGCA
GCAACCCACAGACATTTGTATCATCAAGCTTTTCCTGCACCAAAGTCAGAATCTACCGAACAAT
CAGAAAAGAAGAAAATTTAATCCAAACTTTAAAGATACAGGTGCATGACCAAAA

hide sequence

RefSeq Acc Id:

XM_021101558 ⟹ XP_020957217

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	180,299,434 - 180,407,003 (+)	NCBI

Sequence:

show sequence

CCGGCCAGCGTGGGTCGGCGCCCAGCGTCCCGCCCGAGCGCGCCGGCCGCGAGACCAGAGTGCC
GCCCTGAGGCCTGCTCGGGACACGACACTCTCCCGGCCGGGCCGCCGCGCCCCCCTGGCCCGGA
GCGTCCTTTCCTGAGCCGGGCTCTGCTCCCCACTCTGGGGGTCACGGACGCCCCCGGGCATTCT
TGGGCTGACGCGCCTCCGCTAAACCGCTCCCAGCTTTGTCAGCGCCACAGCAACATCCTCAGAG
CCTGTGCGAACTGCGCCCAGCGCGGGCACAGAGCCTCCCACCTCCAGGAACCTACGCCCGGGAG
AAGAGCGAGCGCAGTGACAGCGCCTCGCCGCCACCAGTCCCCAGACCACCATGGCGAAGAGCCG
CAAGGACAGAAACAGTTGGGGTGGGTTTTCAGAAAAGGGATATGAATGGAGCTCAGAAGAGGAA
GAGTCAGTGAAAAAGGCAGGACCAGTCCAAGTCCTCATTGTCAAAGATGACCATTCCTTTGAAT
TAGATGAAACTGCACTAAATCGGATCCTTCTTTCGGAGGCTGTCAGGGACAAGGAGGTCGTTGC
AGTATCTGTGGCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGATTTCATGTTGAGATAC
ATGTACAACCAGGAGTCTGTTGATTGGGTTGGAGATTACAATGAGCCATTGACTGGTTTTTCAT
GGAGAGGTGGATCTGAACGAGAGACCACAGGAATCCAGATATGGAGTGAAGTCTTCCTTATCAA
TAAACCTGATGGTAAAAAGGTTGCAGTGCTGTTGATGGATACTCAGGGAACCTTTGACAGTCAG
TCAACTTTGAGAGATTCGGCCACAGTATTTGCCCTTAGCACAATGATCAGCTCAATACAGGTAT
ATAACTTATCACAAAATGTCCAGGAGGATGATCTTCAGCACCTTCAGCTTTTCACTGAGTATGG
CAGACTGGCAATGGAGGAAACATTCCTGAAGCCATTTCAGAGTCTGATATTTCTTGTTCGAGAT
TGGAGTTTCCCATACGAATTTTCATATGGAGCTGACGGGGGCTCCAAATTCTTGGAAAAACGCC
TCAAGGTCTCAGGGAACCAGCATGAAGAACTACAGAATGTTCGAAAACACATACATTCCTGTTT
CACCAAAATTTCCTGTTTTCTGCTACCTCATCCTGGCTTAAAAGTAGCTACCAATCCAAACTTC
GATGGAAAACTGAAAGAAATAGATGAAGAATTCATCAAAAACTTGAAAATACTCATTCCTTGGC
TACTTAGTCCTGAGAGCCTAGATATTAAAGAAATCAATGGGAACAAAATCACTTGCCGAGGTCT
GGTGGAGTACTTCAAGGCTTATATAAAGATTTATCAAGGTGAAGAATTACCACATCCCAAATCC
ATGTTACAGGCCACAGCAGAAGCTAACAATTTAGCAGCCGTGGCAACTGCCAAGGATACATACA
ATAAAAAAATGGAAGAGATTTGTGGTGGTGACAAACCATTTCTGGCACCTAATGACCTGCAGAC
CAAACATCTGGAGCTTAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGA
GAGGAATTTAGCCGGCGTTACCTCCAGCAGTTGGAGAGTGAAATAGATGAACTTTACATCCAGT
ACATCAAGCACAATGATAGCAAAAACATCTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGT
TGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCT
AGCCTCTGCAATATGATAATGGGACTGACCCTCATCACTCTGTGCACCTGGGCATACATCCGGT
ACTCCGGAGAATACCGAGAGCTGGGTGCCGTAATAGACCAAGTGGCTGCAGCCTTATGGGACCA
GGGAAGTACAAATGAGGCTTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACATTTGTAT
CATCAAGCTTTTCCTGCACCAAAGTCAGAATCTACCGAACAATCAGAAAAGAAGAAAATTTAAT
CCAAACTTTAAAGATACAGGTGCATGACCAAAATGTCAGTTAAATATTGTTTTATGTCTCCATG
CAAACATTCAAAGTGCTTCCATCAGAACAGAGTAAAACACCAAGCACCTCTGAAGACTGCAAAA
GGGTTTTAGTTCTTTTACTTCAGTGTTTAATAAGCAGATGTATATATGCATGGTTATATCATTT
GGTTAACATGTACAGTTTCCTGATTTAGTCTTCAAATATGCTGTTATAATTTAAAGAGTTTGTC
TATTTATGGTAACAGTACCTGTGTTCTGCTTGAATTTACTAAATTCTAATATCAGGTTATAGTT
AAACCATGTAGTAATACTACTCCACATTTGGATATGCTCATTTTATTTCTATAGAAGAATTTTT
AAATTATTCACATTGTCATTTGTTAAAGAATTGCATAACTCCCGTAGGCTTGATTCAACCTATA
CCATCTTACATATCCCATTGGCTTTTATTTTAAAAGACATTTAAAAGAGCTTTTCAGTTGCTTT
ATCAAAAACTATATATTGCTTCTTCTATATTATGATTTAATATAGCATATAAACCTCTTGATCA
AAAAATGCACAAAAAAATCACTCTGTATATGTATTTGAGTTTCACTGCATTGTATATTTTTTCA
TTTGGTACACAGAGAAATGTATTCATTATAGGTTTATTCTTTTAACATGTGAACTATTATTAAA
GTTTACTCTGGTTCCTAAGATTAAAAACAACTGAATTTGGAAATGCTTGGGAGGCACTGATAGA
GAAGGATGGTTTTGCTCTTTTTTAAAAAAATTTCAAAATGCATTTTCTTTAATGTTGACACCAT
TACAAATTTAGATATCCATTTTAAAAGGTACCCTTTTAAGTACCTTCCAGTTCTTTTAAACCAG
TGATTCTGTATTGTCTTTCTAAGTACTAAAATCTGTGGTGGAATTTCATTGAGTGTACTTTTTA
GAGAAAAAAAAAAAAGTGATGTCACCTATCTGAGAGCTCTAAAACACTAATTTCTACCTTTCTT
AGAAAAGGCTAAATTGTAATTAAATTAAGCAGTAATATTAAGTAAGGAGTAAAGAATGATTAAG
ATGGAAGAGTGTGTGAGAATTCCTAAGATATATAAACTCCTATCTTAAAAAAAGGCTAGTCACA
TGCCTGCAAAATAACTTTTCTCACTGATAAAATTCTGCTAGCCCATTTTCATTTTCCAGTACCC
CTTTCATTATATACTCTTTCCTTTGTCTCTAGGCCTTCTGAATAGAAAAATCAAATATTTCTAA
GCACTATGCACAAAACATGGACTCAAATGCAACACATTTAGTTTCCACAAAAATATATTTAATA
AGCTTGTTATATAAAATCAAACATTTAACACTTTCAACATTTTATCAATAATTCAAACTTACTG
GTATCTAAATCTGGGAGTTTATATTTTGGAAGGTAACCTAAATGAAGAATTTATTTACATATTT
ACAACACATGTAAATATAACTAGAGCTATTTCAACAAGTGTTGAAATTCACAGAATTTTGTAGG
CTACATGTGCCATAAATTTGCCTGCAATCAAATGTACTATGCTAATTATGAACAATGTCTTAAT
AACTACTAAACCAAAAGGGAAAAAATGAGGGGGAAATACTGGGGTTTTAAAGTTGTGTGACAAA
CTCTTACAAGATAAAAGATCTGTAAATCAATTTAATGACCAAGATTTCTTAATGAATCCCTGAT
TGTCATTTTTGGCAGCTCAACCCAGTCCATCAGGATGGCAACGTGCTATGCTGTTGGGAACCCT
CCAGTGTCTCATCAGAATCACGTTACTAAATGCCATAAGAGCCCTGGCACAAAGTAAGGAAGTT
ATATTAGGAACTGTGACTGCTGTACACACCTTCCCACACAGGCTTGGGCCTTATGCCTAATTTA
ATTCCTGAAAGATTACAGGTCCTTCACCCTTTCAGACCAAAAAATACTTTTTCAACATGTTTTA
AAAGGGTTCTTTACATTTGGGGGCAGAGGAACTTCATACATTATATACAAAAATTTATCACCCA
AATCCCATTTTATGTTTTGAATGGTAATATTTAAACCATCCAATTCCAGGCAATATTCCACATG
AAAGCAGTAGACATCTTTTTTTAAATACTGCATAGGTTATCTCTCTGCTTTTTT

hide sequence

RefSeq Acc Id:

XM_021101569 ⟹ XP_020957228

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	180,325,619 - 180,407,003 (+)	NCBI

Sequence:

show sequence

ATTTACTTAATTTCTGTGCATCTTTATTATTTCCTTCTTGTATTTCTTTGGTTTCATTCTATAT
TCTTTTTTTAACCTAAAAAGTAGATACTGAGCTCATTTATTTTGAGCTTAGTCCTCTATTTCTA
ATATATGGGCCATAGGTTTTTCTCTTAATATCAGTTTTTGCTGTGTCCTGTATGTGTTGATATG
CAGTAGATTCATTCTCAAGCTGTTTTAAGTATGTAAATGTCCACAATTATTTCTTTCTTTACCT
TTATTAATATAAAGAATAAATTTCTTTATTAATATACAAAAACTATGGATTTTTCTAAATCATA
TTTTTATTACTGATTTCATGCTTAATTTTATTCTAGTCAGAGTGTGTGTTGTACAACAGCCACT
TTCTGTGGTGATAAAAATGTTCTCTATCTATATTGTCCAATATGGTAGCCTCTAGCCATATGTG
TCTTTTGAGCATTTGAAGTATGGTCAGCGTGAATGAGGACCAAACATTTACTTTAATTCTACTT
AATTTAATTTAAACAGCCATGTGTAGCTAGTGGCTACAATATTGGGCCACCAGCCACATGTAGC
TAGTACAGGTTTATGGAATACCTGGTATGAACTTTGTTGAAACTTGTTTTATATCCTCCTGCAT
GTTTAATTTTTATAAATATTCCATGTAAGTTGAAAAGCATTTTTAGTTTACTCATTTTTATGCA
GTATGAAATATGTTTAATTAGCTTGTTTTTTAAGTGTATTGTCCATATCTTCCAGACAGTAACT
GATTTCTGCACTGTTTGATCCACTAGATACTGATATCTTATAGATACTTTAAAATTCTGAGAGA
TGTTTTAAAACATGACAGTAGATTTGTCAATTTTCCCTTCATCTTCCATTAAGCTTTGTTTTTG
GACCTTTGAGCTAAGTCATTAGGTGCCCACAAATCTTATTACATCTTCCTGATGAATTAAGCCT
TTTATTTTTATATAGTGAGCCTCTTTCTCTTAGGTAATGCTTTTTTCCCAAAGTCTATTTTGTC
TGGTATTAATATAGATGCTTCATATGTCTTCTGCTGATTTAGTTTATGGGCCTACTGAGAAGGA
GTGGCTGGAGTTGGAGGCTGACTGATGGCCACAAAATGAGTCAGTTACTTTGTCTATCTGGTTT
TTGAGATCCTCCTTCACAGTAAATGGTGGGTTTTCAGAAAAGGGATATGAATGGAGCTCAGAAG
AGGAAGAGTCAGTGAAAAAGGCAGGACCAGTCCAAGTCCTCATTGTCAAAGATGACCATTCCTT
TGAATTAGATGAAACTGCACTAAATCGGATCCTTCTTTCGGAGGCTGTCAGGGACAAGGAGGTC
GTTGCAGTATCTGTGGCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGATTTCATGTTGA
GATACATGTACAACCAGGAGTCTGTTGATTGGGTTGGAGATTACAATGAGCCATTGACTGGTTT
TTCATGGAGAGGTGGATCTGAACGAGAGACCACAGGAATCCAGATATGGAGTGAAGTCTTCCTT
ATCAATAAACCTGATGGTAAAAAGGTTGCAGTGCTGTTGATGGATACTCAGGGAACCTTTGACA
GTCAGTCAACTTTGAGAGATTCGGCCACAGTATTTGCCCTTAGCACAATGATCAGCTCAATACA
GGTATATAACTTATCACAAAATGTCCAGGAGGATGATCTTCAGCACCTTCAGCTTTTCACTGAG
TATGGCAGACTGGCAATGGAGGAAACATTCCTGAAGCCATTTCAGAGTCTGATATTTCTTGTTC
GAGATTGGAGTTTCCCATACGAATTTTCATATGGAGCTGACGGGGGCTCCAAATTCTTGGAAAA
ACGCCTCAAGGTCTCAGGGAACCAGCATGAAGAACTACAGAATGTTCGAAAACACATACATTCC
TGTTTCACCAAAATTTCCTGTTTTCTGCTACCTCATCCTGGCTTAAAAGTAGCTACCAATCCAA
ACTTCGATGGAAAACTGAAAGAAATAGATGAAGAATTCATCAAAAACTTGAAAATACTCATTCC
TTGGCTACTTAGTCCTGAGAGCCTAGATATTAAAGAAATCAATGGGAACAAAATCACTTGCCGA
GGTCTGGTGGAGTACTTCAAGGCTTATATAAAGATTTATCAAGGTGAAGAATTACCACATCCCA
AATCCATGTTACAGGCCACAGCAGAAGCTAACAATTTAGCAGCCGTGGCAACTGCCAAGGATAC
ATACAATAAAAAAATGGAAGAGATTTGTGGTGGTGACAAACCATTTCTGGCACCTAATGACCTG
CAGACCAAACATCTGGAGCTTAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGG
GTGGAGAGGAATTTAGCCGGCGTTACCTCCAGCAGTTGGAGAGTGAAATAGATGAACTTTACAT
CCAGTACATCAAGCACAATGATAGCAAAAACATCTTCCATGCAGCTCGTACCCCAGCCACACTG
TTTGTTGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCA
TAGCTAGCCTCTGCAATATGATAATGGGACTGACCCTCATCACTCTGTGCACCTGGGCATACAT
CCGGTACTCCGGAGAATACCGAGAGCTGGGTGCCGTAATAGACCAAGTGGCTGCAGCCTTATGG
GACCAGGGAAGTACAAATGAGGCTTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACATT
TGTATCATCAAGCTTTTCCTGCACCAAAGTCAGAATCTACCGAACAATCAGAAAAGAAGAAAAT
TTAATCCAAACTTTAAAGATACAGGTGCATGACCAAAATGTCAGTTAAATATTGTTTTATGTCT
CCATGCAAACATTCAAAGTGCTTCCATCAGAACAGAGTAAAACACCAAGCACCTCTGAAGACTG
CAAAAGGGTTTTAGTTCTTTTACTTCAGTGTTTAATAAGCAGATGTATATATGCATGGTTATAT
CATTTGGTTAACATGTACAGTTTCCTGATTTAGTCTTCAAATATGCTGTTATAATTTAAAGAGT
TTGTCTATTTATGGTAACAGTACCTGTGTTCTGCTTGAATTTACTAAATTCTAATATCAGGTTA
TAGTTAAACCATGTAGTAATACTACTCCACATTTGGATATGCTCATTTTATTTCTATAGAAGAA
TTTTTAAATTATTCACATTGTCATTTGTTAAAGAATTGCATAACTCCCGTAGGCTTGATTCAAC
CTATACCATCTTACATATCCCATTGGCTTTTATTTTAAAAGACATTTAAAAGAGCTTTTCAGTT
GCTTTATCAAAAACTATATATTGCTTCTTCTATATTATGATTTAATATAGCATATAAACCTCTT
GATCAAAAAATGCACAAAAAAATCACTCTGTATATGTATTTGAGTTTCACTGCATTGTATATTT
TTTCATTTGGTACACAGAGAAATGTATTCATTATAGGTTTATTCTTTTAACATGTGAACTATTA
TTAAAGTTTACTCTGGTTCCTAAGATTAAAAACAACTGAATTTGGAAATGCTTGGGAGGCACTG
ATAGAGAAGGATGGTTTTGCTCTTTTTTAAAAAAATTTCAAAATGCATTTTCTTTAATGTTGAC
ACCATTACAAATTTAGATATCCATTTTAAAAGGTACCCTTTTAAGTACCTTCCAGTTCTTTTAA
ACCAGTGATTCTGTATTGTCTTTCTAAGTACTAAAATCTGTGGTGGAATTTCATTGAGTGTACT
TTTTAGAGAAAAAAAAAAAAGTGATGTCACCTATCTGAGAGCTCTAAAACACTAATTTCTACCT
TTCTTAGAAAAGGCTAAATTGTAATTAAATTAAGCAGTAATATTAAGTAAGGAGTAAAGAATGA
TTAAGATGGAAGAGTGTGTGAGAATTCCTAAGATATATAAACTCCTATCTTAAAAAAAGGCTAG
TCACATGCCTGCAAAATAACTTTTCTCACTGATAAAATTCTGCTAGCCCATTTTCATTTTCCAG
TACCCCTTTCATTATATACTCTTTCCTTTGTCTCTAGGCCTTCTGAATAGAAAAATCAAATATT
TCTAAGCACTATGCACAAAACATGGACTCAAATGCAACACATTTAGTTTCCACAAAAATATATT
TAATAAGCTTGTTATATAAAATCAAACATTTAACACTTTCAACATTTTATCAATAATTCAAACT
TACTGGTATCTAAATCTGGGAGTTTATATTTTGGAAGGTAACCTAAATGAAGAATTTATTTACA
TATTTACAACACATGTAAATATAACTAGAGCTATTTCAACAAGTGTTGAAATTCACAGAATTTT
GTAGGCTACATGTGCCATAAATTTGCCTGCAATCAAATGTACTATGCTAATTATGAACAATGTC
TTAATAACTACTAAACCAAAAGGGAAAAAATGAGGGGGAAATACTGGGGTTTTAAAGTTGTGTG
ACAAACTCTTACAAGATAAAAGATCTGTAAATCAATTTAATGACCAAGATTTCTTAATGAATCC
CTGATTGTCATTTTTGGCAGCTCAACCCAGTCCATCAGGATGGCAACGTGCTATGCTGTTGGGA
ACCCTCCAGTGTCTCATCAGAATCACGTTACTAAATGCCATAAGAGCCCTGGCACAAAGTAAGG
AAGTTATATTAGGAACTGTGACTGCTGTACACACCTTCCCACACAGGCTTGGGCCTTATGCCTA
ATTTAATTCCTGAAAGATTACAGGTCCTTCACCCTTTCAGACCAAAAAATACTTTTTCAACATG
TTTTAAAAGGGTTCTTTACATTTGGGGGCAGAGGAACTTCATACATTATATACAAAAATTTATC
ACCCAAATCCCATTTTATGTTTTGAATGGTAATATTTAAACCATCCAATTCCAGGCAATATTCC
ACATGAAAGCAGTAGACATCTTTTTTTAAATACTGCATAGGTTATCTCTCTGCTTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_013848847	(Get FASTA)	NCBI Sequence Viewer
	XP_013848848	(Get FASTA)	NCBI Sequence Viewer
	XP_020957217	(Get FASTA)	NCBI Sequence Viewer
	XP_020957228	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000005397
	ENSSSCP00000005397.4
	ENSSSCP00000005398
	ENSSSCP00000005398.4
	ENSSSCP00000065022.2
	ENSSSCP00000070861.1
	ENSSSCP00015020297.1
	ENSSSCP00025046749.1
	ENSSSCP00025046821.1
	ENSSSCP00030044487.1
	ENSSSCP00035026378.1
	ENSSSCP00040034671.1
	ENSSSCP00045011807.1
	ENSSSCP00045011833.1
	ENSSSCP00045011923.1
	ENSSSCP00050045245.1
	ENSSSCP00050045246.1
	ENSSSCP00055038144.1
	ENSSSCP00060009115.1
	ENSSSCP00065028050.1
	ENSSSCP00065028057.1
	ENSSSCP00070000972.1
	ENSSSCP00070000983.1

RefSeq Acc Id:	XP_020957217 ⟸ XM_021101558
- Peptide Label:	isoform X1
- UniProtKB:	F1SHX5 (UniProtKB/TrEMBL), A0A4X1SG47 (UniProtKB/TrEMBL), A0A8D1FH52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRD KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSE VFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL FTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKH IHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKI TCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAP NDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTP ATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAA ALWDQGSTNEALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI hide sequence

RefSeq Acc Id:	XP_013848847 ⟸ XM_013993393
- Peptide Label:	isoform X1
- UniProtKB:	F1SHX5 (UniProtKB/TrEMBL), A0A4X1SG47 (UniProtKB/TrEMBL), A0A8D1FH52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRD KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSE VFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL FTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKH IHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKI TCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAP NDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTP ATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAA ALWDQGSTNEALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI hide sequence

RefSeq Acc Id:	XP_013848848 ⟸ XM_013993394
- Peptide Label:	isoform X2
- UniProtKB:	F1SHX6 (UniProtKB/TrEMBL), A0A4X1SGI8 (UniProtKB/TrEMBL), A0A8D1FH52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRD KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSE VFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL FTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKH IHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKI TCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAP NDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTP ATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAA ALWDQALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI hide sequence

RefSeq Acc Id:	XP_020957228 ⟸ XM_021101569
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1CWI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDT QGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQS LIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLK VATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGE ELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFR GVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGF IGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAA ATHRHLYHQAFPAPKSESTEQSEKKKI hide sequence

Ensembl Acc Id:

ENSSSCP00000005397 ⟸ ENSSSCT00000005535

Ensembl Acc Id:

ENSSSCP00000005398 ⟸ ENSSSCT00000005536

Ensembl Acc Id:

ENSSSCP00000070861 ⟸ ENSSSCT00000089833

Ensembl Acc Id:

ENSSSCP00000065022 ⟸ ENSSSCT00000090817

Protein Domains

GB1/RHD3-type G

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000005020	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015037992	UniProtKB/TrEMBL
	ENSSSCG00025075944	UniProtKB/TrEMBL
	ENSSSCG00030068861	UniProtKB/TrEMBL
	ENSSSCG00035048919	UniProtKB/TrEMBL
	ENSSSCG00040058975	UniProtKB/TrEMBL
	ENSSSCG00045010089	UniProtKB/TrEMBL
	ENSSSCG00050075441	UniProtKB/TrEMBL
	ENSSSCG00055024078	UniProtKB/TrEMBL
	ENSSSCG00060016548	UniProtKB/TrEMBL
	ENSSSCG00065047325	UniProtKB/TrEMBL
	ENSSSCG00070000576	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000005535	ENTREZGENE
	ENSSSCT00000005535.5	UniProtKB/TrEMBL
	ENSSSCT00000005536	ENTREZGENE
	ENSSSCT00000005536.5	UniProtKB/TrEMBL
	ENSSSCT00000089833.2	UniProtKB/TrEMBL
	ENSSSCT00000090817.2	UniProtKB/TrEMBL
	ENSSSCT00015050847.1	UniProtKB/TrEMBL
	ENSSSCT00025104920.1	UniProtKB/TrEMBL
	ENSSSCT00025105028.1	UniProtKB/TrEMBL
	ENSSSCT00030096493.1	UniProtKB/TrEMBL
	ENSSSCT00035065170.1	UniProtKB/TrEMBL
	ENSSSCT00040080126.1	UniProtKB/TrEMBL
	ENSSSCT00045017128.1	UniProtKB/TrEMBL
	ENSSSCT00045017161.1	UniProtKB/TrEMBL
	ENSSSCT00045017292.1	UniProtKB/TrEMBL
	ENSSSCT00050103450.1	UniProtKB/TrEMBL
	ENSSSCT00050103451.1	UniProtKB/TrEMBL
	ENSSSCT00055047794.1	UniProtKB/TrEMBL
	ENSSSCT00060022091.1	UniProtKB/TrEMBL
	ENSSSCT00065064726.1	UniProtKB/TrEMBL
	ENSSSCT00065064739.1	UniProtKB/TrEMBL
	ENSSSCT00070001101.1	UniProtKB/TrEMBL
	ENSSSCT00070001117.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
	AHSP	UniProtKB/TrEMBL
InterPro	G_GB1_RHD3_dom	UniProtKB/TrEMBL
	Guanylate-bd_C_sf	UniProtKB/TrEMBL
	Guanylate-bd_N	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	ssc:100158193	UniProtKB/TrEMBL
NCBI Gene	ATL1	ENTREZGENE
PANTHER	ATLASTIN-1	UniProtKB/TrEMBL
	GUANYLATE BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	GBP	UniProtKB/TrEMBL
PROSITE	G_GB1_RHD3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48340	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A4X1SG47	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SGI8	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QSP4_PIG	UniProtKB/TrEMBL
	A0A5G2RHK8_PIG	UniProtKB/TrEMBL
	A0A8D1CWI6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FH52	ENTREZGENE, UniProtKB/TrEMBL
	F1SHX5	ENTREZGENE, UniProtKB/TrEMBL
	F1SHX6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:85627	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM