GPD1L (glycerol-3-phosphate dehydrogenase 1 like) - Rat Genome Database

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Gene: GPD1L (glycerol-3-phosphate dehydrogenase 1 like) Sus scrofa
Analyze
Symbol: GPD1L
Name: glycerol-3-phosphate dehydrogenase 1 like
RGD ID: 14242841
Description: ENCODES a protein that exhibits glycerol-3-phosphate dehydrogenase (NAD+) activity (inferred); NAD binding (inferred); oxidoreductase activity (inferred); INVOLVED IN NADH metabolic process (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); Brugada syndrome 2 (ortholog); cardiomyopathy (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycerol-3-phosphate dehydrogenase 1-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,127,088 - 18,176,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,126,471 - 18,176,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,616,343 - 20,666,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPD1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,127,088 - 18,176,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,126,471 - 18,176,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,616,343 - 20,666,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPD1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,106,620 - 32,168,709 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,105,689 - 32,168,709 (+)EnsemblGRCh38hg38GRCh38
GRCh37332,148,112 - 32,210,201 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,123,148 - 32,185,205 (+)NCBINCBI36Build 36hg18NCBI36
Build 34332,123,147 - 32,185,205NCBI
Celera332,085,677 - 32,147,612 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,082,648 - 32,145,486 (+)NCBIHuRef
CHM1_1332,097,981 - 32,160,183 (+)NCBICHM1_1
T2T-CHM13v2.0332,103,733 - 32,165,789 (+)NCBIT2T-CHM13v2.0
Gpd1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,728,407 - 114,763,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,728,409 - 114,763,055 (-)EnsemblGRCm39 Ensembl
GRCm389114,899,339 - 114,933,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,899,341 - 114,933,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,808,457 - 114,843,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,750,998 - 114,782,525 (-)NCBIMGSCv36mm8
Celera9115,374,567 - 115,412,670 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map965.47NCBI
Gpd1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,469,282 - 123,498,948 (-)NCBIGRCr8
mRatBN7.28114,591,103 - 114,620,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,588,487 - 114,620,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8120,207,646 - 120,237,017 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,406,890 - 118,436,261 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,249,743 - 116,279,122 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,957,570 - 122,987,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,954,948 - 122,987,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,270,749 - 122,300,415 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,317,528 - 119,347,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,837,868 - 113,867,534 (-)NCBICelera
Cytogenetic Map8q32NCBI
Gpd1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543023,481,957 - 23,539,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543023,481,957 - 23,536,407 (+)NCBIChiLan1.0ChiLan1.0
GPD1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,086,093 - 32,148,039 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,090,860 - 32,152,806 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,026,586 - 32,088,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,342,776 - 32,404,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,342,776 - 32,404,172 (+)Ensemblpanpan1.1panPan2
GPD1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,568,914 - 12,631,903 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,522,398 - 12,632,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2312,497,251 - 12,606,905 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,813,538 - 12,923,495 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,813,607 - 12,923,377 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,614,598 - 12,724,182 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,757,296 - 12,867,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,769,710 - 12,879,345 (-)NCBIUU_Cfam_GSD_1.0
Gpd1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,510,519 - 189,636,146 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,649,133 - 22,696,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,649,107 - 22,774,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPD1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,617,122 - 76,680,508 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,617,441 - 76,677,713 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604149,969,861 - 50,034,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpd1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,173,551 - 10,240,704 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,173,629 - 10,240,200 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GPD1L
2198 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000025190   ⟹   ENSSSCP00000025060
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,126,623 - 18,176,668 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068706   ⟹   ENSSSCP00000070066
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1318,127,088 - 18,176,666 (+)Ensembl
RefSeq Acc Id: XM_003483139   ⟹   XP_003483187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11318,126,471 - 18,176,669 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003483187   ⟸   XM_003483139
- UniProtKB: A0A480JNF9 (UniProtKB/TrEMBL),   A0A4X1UFJ9 (UniProtKB/TrEMBL),   A0A8D1VXZ8 (UniProtKB/TrEMBL),   A0A8D0NBP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000025060   ⟸   ENSSSCT00000025190
Ensembl Acc Id: ENSSSCP00000070066   ⟸   ENSSSCT00000068706
Protein Domains
Glycerol-3-phosphate dehydrogenase NAD-dependent C-   Glycerol-3-phosphate dehydrogenase NAD-dependent N-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021977 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032987 UniProtKB/TrEMBL
  ENSSSCG00015030290 UniProtKB/TrEMBL
  ENSSSCG00025022223 UniProtKB/TrEMBL
  ENSSSCG00030074355 UniProtKB/TrEMBL
  ENSSSCG00035054576 UniProtKB/TrEMBL
  ENSSSCG00040000324 UniProtKB/TrEMBL
  ENSSSCG00045007206 UniProtKB/TrEMBL
  ENSSSCG00050028286 UniProtKB/TrEMBL
  ENSSSCG00055022358 UniProtKB/TrEMBL
  ENSSSCG00060052784 UniProtKB/TrEMBL
  ENSSSCG00065034719 UniProtKB/TrEMBL
  ENSSSCG00070016278 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000068706 ENTREZGENE
  ENSSSCT00000068706.1 UniProtKB/TrEMBL
  ENSSSCT00005053242.1 UniProtKB/TrEMBL
  ENSSSCT00005053267.1 UniProtKB/TrEMBL
  ENSSSCT00015041368.1 UniProtKB/TrEMBL
  ENSSSCT00015041496.1 UniProtKB/TrEMBL
  ENSSSCT00025030242.1 UniProtKB/TrEMBL
  ENSSSCT00030104333.1 UniProtKB/TrEMBL
  ENSSSCT00035072822.1 UniProtKB/TrEMBL
  ENSSSCT00040000440.1 UniProtKB/TrEMBL
  ENSSSCT00045011993.1 UniProtKB/TrEMBL
  ENSSSCT00050038057.1 UniProtKB/TrEMBL
  ENSSSCT00055044023.1 UniProtKB/TrEMBL
  ENSSSCT00060071832.1 UniProtKB/TrEMBL
  ENSSSCT00060071841.1 UniProtKB/TrEMBL
  ENSSSCT00065047244.1 UniProtKB/TrEMBL
  ENSSSCT00070032028.1 UniProtKB/TrEMBL
  ENSSSCT00070032039.1 UniProtKB/TrEMBL
  ENSSSCT00070032044.1 UniProtKB/TrEMBL
  ENSSSCT00070032048.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/TrEMBL
  G3P_DH_NAD-dep UniProtKB/TrEMBL
  G3P_DH_NAD-dep_C UniProtKB/TrEMBL
  G3P_DH_NAD-dep_euk UniProtKB/TrEMBL
  G3P_DH_NAD-dep_N UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100624347 UniProtKB/TrEMBL
NCBI Gene GPD1L ENTREZGENE
PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE UniProtKB/TrEMBL
  GLYCEROL-3-PHOSPHATE DEHYDROGENASE 1-LIKE PROTEIN UniProtKB/TrEMBL
Pfam NAD_Gly3P_dh_C UniProtKB/TrEMBL
  NAD_Gly3P_dh_N UniProtKB/TrEMBL
PIRSF Glycerol-3-P_dh UniProtKB/TrEMBL
PRINTS GPDHDRGNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A480JNF9 ENTREZGENE
  A0A4X1UA64_PIG UniProtKB/TrEMBL
  A0A4X1UCL3_PIG UniProtKB/TrEMBL
  A0A4X1UF23_PIG UniProtKB/TrEMBL
  A0A4X1UFJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NBP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R9P0_PIG UniProtKB/TrEMBL
  A0A8D1VXZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YJ99_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480JNF9 UniProtKB/TrEMBL
  A0A5G2QYS6 UniProtKB/TrEMBL
VGNC ID VGNC:108661 ENTREZGENE