FAM163A (family with sequence similarity 163 member A) - Rat Genome Database

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Gene: FAM163A (family with sequence similarity 163 member A) Sus scrofa
Analyze
Symbol: FAM163A
Name: family with sequence similarity 163 member A
RGD ID: 14240030
Description: ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM163A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,380,415 - 121,461,054 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,378,101 - 121,460,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,241,108 - 133,250,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAM163A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,380,415 - 121,461,054 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,378,101 - 121,460,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,241,108 - 133,250,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM163A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,727,776 - 179,816,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,743,291 - 179,816,198 (+)EnsemblGRCh38hg38GRCh38
GRCh371179,696,911 - 179,785,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,978,921 - 178,051,956 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,819,916 - 152,892,948 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1150,944,055 - 151,017,319 (+)NCBIHuRef
CHM1_11181,136,103 - 181,209,142 (+)NCBICHM1_1
T2T-CHM13v2.01179,083,538 - 179,171,949 (+)NCBIT2T-CHM13v2.0
Fam163a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,951,702 - 156,033,027 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,951,712 - 156,032,596 (-)EnsemblGRCm39 Ensembl
GRCm381156,075,956 - 156,205,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,075,966 - 156,205,026 (-)EnsemblGRCm38mm10GRCm38
MGSCv371157,923,096 - 157,935,018 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,838,184 - 157,850,104 (-)NCBIMGSCv36mm8
Celera1158,513,987 - 158,596,643 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map167.71NCBI
Fam163a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81370,813,129 - 70,891,410 (-)NCBIGRCr8
mRatBN7.21368,262,867 - 68,341,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1368,262,872 - 68,341,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,842,747 - 70,920,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01372,163,146 - 72,240,552 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01369,424,631 - 69,502,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01373,741,674 - 73,820,114 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,741,679 - 73,819,896 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01378,666,728 - 78,744,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41371,109,777 - 71,189,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1368,125,494 - 68,203,432 (-)NCBICelera
Cytogenetic Map13q22NCBI
Fam163a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540619,028,513 - 19,080,892 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540619,019,569 - 19,079,995 (+)NCBIChiLan1.0ChiLan1.0
LOC100994085
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2169,951,252 - 69,962,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,609,523 - 69,696,141 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,223,640 - 155,297,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,904,436 - 158,977,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,974,145 - 158,977,214 (+)Ensemblpanpan1.1panPan2
FAM163A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1720,148,593 - 20,224,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl720,148,588 - 20,153,443 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha719,670,988 - 19,749,312 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0719,881,915 - 19,960,475 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl719,881,915 - 19,960,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1719,791,104 - 19,869,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0719,896,903 - 19,975,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0720,032,908 - 20,111,272 (-)NCBIUU_Cfam_GSD_1.0
Fam163a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934491,458,452 - 91,519,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364819,304,594 - 9,312,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364819,307,340 - 9,367,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM163A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,557,621 - 49,638,984 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2549,557,548 - 49,558,635 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605550,949,953 - 51,020,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam163a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624771118,268 - 128,501 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247711,090 - 128,402 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM163A
3450 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000059629   ⟹   ENSSSCP00000080216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9121,380,415 - 121,461,054 (+)Ensembl
RefSeq Acc Id: XM_021063745   ⟹   XP_020919404
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19121,378,101 - 121,460,641 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063746   ⟹   XP_020919405
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19121,380,414 - 121,460,641 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063747   ⟹   XP_020919406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19121,380,933 - 121,460,641 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063748   ⟹   XP_020919407
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19121,420,196 - 121,460,641 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063749   ⟹   XP_020919408
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19121,380,727 - 121,460,641 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020919404   ⟸   XM_021063745
- UniProtKB: A0A4X1U6P5 (UniProtKB/TrEMBL),   A0A287AIB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919405   ⟸   XM_021063746
- UniProtKB: A0A4X1U6P5 (UniProtKB/TrEMBL),   A0A287AIB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919408   ⟸   XM_021063749
- UniProtKB: A0A4X1U6P5 (UniProtKB/TrEMBL),   A0A287AIB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919406   ⟸   XM_021063747
- UniProtKB: A0A4X1U6P5 (UniProtKB/TrEMBL),   A0A287AIB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919407   ⟸   XM_021063748
- UniProtKB: A0A4X1U6P5 (UniProtKB/TrEMBL),   A0A287AIB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080216   ⟸   ENSSSCT00000059629


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033352 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025040719 UniProtKB/TrEMBL
  ENSSSCG00045036277 UniProtKB/TrEMBL
  ENSSSCG00055025634 UniProtKB/TrEMBL
  ENSSSCG00065002555 UniProtKB/TrEMBL
  ENSSSCG00070014540 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059629 ENTREZGENE
  ENSSSCT00000059629.2 UniProtKB/TrEMBL
  ENSSSCT00025055227.1 UniProtKB/TrEMBL
  ENSSSCT00045062407.1 UniProtKB/TrEMBL
  ENSSSCT00055050675.1 UniProtKB/TrEMBL
  ENSSSCT00065003207.1 UniProtKB/TrEMBL
  ENSSSCT00070028511.1 UniProtKB/TrEMBL
  ENSSSCT00070028513.1 UniProtKB/TrEMBL
InterPro FAM163 UniProtKB/TrEMBL
  FAM163A UniProtKB/TrEMBL
NCBI Gene FAM163A ENTREZGENE
PANTHER PROTEIN FAM163A UniProtKB/TrEMBL
  PTHR31914 UniProtKB/TrEMBL
Pfam FAM163 UniProtKB/TrEMBL
UniProt A0A287AIB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U6P5 ENTREZGENE, UniProtKB/TrEMBL