DERA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 5 | 56,590,980 - 56,706,458 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 5 | 56,590,982 - 56,706,479 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 5 | 59,878,455 - 59,995,841 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
DERA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 12 | 15,911,332 - 16,037,381 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 12 | 15,911,302 - 16,037,381 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 12 | 16,064,266 - 16,190,315 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 12 | 15,955,453 - 16,081,582 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 12 | 15,955,549 - 16,081,478 | NCBI | | | | | Celera | 12 | 21,209,100 - 21,335,267 (+) | NCBI | | Celera | | | Cytogenetic Map | 12 | p12.3 | NCBI | | | | | HuRef | 12 | 15,833,389 - 15,959,597 (+) | NCBI | | HuRef | | | CHM1_1 | 12 | 16,030,127 - 16,156,272 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 12 | 15,788,590 - 15,914,666 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Dera (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 6 | 137,731,093 - 137,814,894 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 6 | 137,731,544 - 137,834,338 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 6 | 137,754,577 - 137,837,872 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 6 | 137,754,546 - 137,857,340 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 6 | 137,703,098 - 137,786,393 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 6 | 137,718,773 - 137,802,068 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 6 | 140,820,521 - 140,904,146 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | G1 | NCBI | | | | | cM Map | 6 | 67.32 | NCBI | | | | |
|
Dera (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 4 | 172,394,971 - 172,473,746 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 4 | 170,663,689 - 170,742,469 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 4 | 170,663,665 - 170,758,865 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 4 | 176,958,855 - 177,037,536 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 4 | 172,743,186 - 172,821,868 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 4 | 171,363,565 - 171,442,248 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 4 | 171,748,254 - 171,826,414 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 4 | 171,748,273 - 171,826,409 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 4 | 236,005,130 - 236,082,656 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 4 | 174,881,147 - 174,960,828 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 4 | 159,239,888 - 159,318,620 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q44 | NCBI | | | | |
|
Dera (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955413 | 12,571,176 - 12,685,852 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955413 | 12,571,341 - 12,682,985 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
DERA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 10 | 21,358,283 - 21,483,635 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 12 | 21,355,045 - 21,480,408 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 12 | 15,912,337 - 16,037,778 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 12 | 16,308,938 - 16,433,927 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 12 | 16,308,938 - 16,433,916 (+) | Ensembl | panpan1.1 | | panPan2 | |
|
DERA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 27 | 30,675,225 - 30,741,202 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 27 | 30,675,247 - 30,817,388 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 27 | 15,655,878 - 15,773,298 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 27 | 30,994,487 - 31,111,963 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 27 | 30,992,054 - 31,111,933 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 27 | 30,885,023 - 31,002,386 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 27 | 30,839,662 - 30,957,127 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 27 | 15,378,197 - 15,495,659 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Dera (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404945 | 91,827,965 - 91,937,587 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936587 | 1,555,531 - 1,665,289 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936587 | 1,555,534 - 1,665,217 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
DERA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 11 | 15,819,678 - 15,947,137 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 11 | 15,819,708 - 15,947,159 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666069 | 19,353,060 - 19,480,500 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Dera (Heterocephalus glaber - naked mole-rat) |
|