IFN-ALPHAOMEGA (interferon-alphaomega) - Rat Genome Database

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Gene: IFN-ALPHAOMEGA (interferon-alphaomega) Sus scrofa
Analyze
No known orthologs.
Symbol: IFN-ALPHAOMEGA
Name: interferon-alphaomega
RGD ID: 14230449
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); signal transduction (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,831,741 - 201,832,298 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,831,741 - 201,832,298 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,450,727 - 225,451,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IFN-ALPHAOMEGAPigadaptive immune response involved_inIBAMGI:107657|PANTHER:PTN002618644150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigB cell activation involved in immune response involved_inIBAPANTHER:PTN002618644|UniProtKB:P01574150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigdefense response involved_inIEAInterPro:IPR000471150520179 InterProGO_REF:0000002
IFN-ALPHAOMEGAPigdefense response to virus involved_inIEAUniProtKB-KW:KW-0051150520179 UniProtGO_REF:0000043
IFN-ALPHAOMEGAPighumoral immune response involved_inIBAMGI:107657|PANTHER:PTN002618644150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPignatural killer cell activation involved in immune response involved_inIBAMGI:107659|MGI:107664|MGI:107668|PANTHER:PTN002618644150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigresponse to exogenous dsRNA involved_inIBAPANTHER:PTN002618644|RGD:2865|UniProtKB:P01574|ZFIN:ZDB-GENE-030721-3150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigsignal transduction involved_inIEAGO:0005125150520179 GOCGO_REF:0000108
IFN-ALPHAOMEGAPigT cell activation involved in immune response involved_inIBAMGI:107668|PANTHER:PTN002618644150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigtype I interferon-mediated signaling pathway involved_inIBAMGI:107657|MGI:107668|PANTHER:PTN002618644|UniProtKB:P01563|UniProtKB:P01574150520179 GO_CentralGO_REF:0000033
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IFN-ALPHAOMEGAPigextracellular region located_inIEAInterPro:IPR000471150520179 InterProGO_REF:0000002
IFN-ALPHAOMEGAPigextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
IFN-ALPHAOMEGAPigextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
IFN-ALPHAOMEGAPigextracellular space located_inIEAUniProtKB-KW:KW-0202150520179 UniProtGO_REF:0000043
IFN-ALPHAOMEGAPigextracellular space is_active_inIBAMGI:107657|MGI:107659|MGI:107662|MGI:107664|MGI:107668|PANTHER:PTN000190054|UniProtKB:P01563|UniProtKB:P01574150520179 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IFN-ALPHAOMEGAPigcytokine activity enablesIEAUniProtKB-KW:KW-0202150520179 UniProtGO_REF:0000043
IFN-ALPHAOMEGAPigcytokine activity enablesIBAMGI:107657|MGI:107668|PANTHER:PTN000190054|UniProtKB:P01563|UniProtKB:P01574150520179 GO_CentralGO_REF:0000033
IFN-ALPHAOMEGAPigcytokine receptor binding enablesIEAInterPro:IPR000471150520179 InterProGO_REF:0000002
IFN-ALPHAOMEGAPigtype I interferon receptor binding enablesIBAMGI:107657|MGI:2448469|PANTHER:PTN000190054|UniProtKB:Q9P0W0150520179 GO_CentralGO_REF:0000033

PMID:20406849   PMID:22301074   PMID:30032202  



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Variants in IFN-ALPHAOMEGA
10 total Variants



ectoderm
nervous system
1 1



Ensembl Acc Id: ENSSSCT00000023124   ⟹   ENSSSCP00000026911
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,831,741 - 201,832,298 (+)Ensembl
RefSeq Acc Id: NM_001166320   ⟹   NP_001159792
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,831,741 - 201,832,298 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001159792   ⟸   NM_001166320
- Peptide Label: precursor
- UniProtKB: C8CKA9 (UniProtKB/TrEMBL),   A0A4X1WBX0 (UniProtKB/TrEMBL),   A0A8D0U0D2 (UniProtKB/TrEMBL),   A0A8D0YZ30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000026911   ⟸   ENSSSCT00000023124



1 to 40 of 42 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000021504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015028970 UniProtKB/TrEMBL
  ENSSSCG00025055853 UniProtKB/TrEMBL
  ENSSSCG00030053570 UniProtKB/TrEMBL
  ENSSSCG00035018958 UniProtKB/TrEMBL
  ENSSSCG00040069402 UniProtKB/TrEMBL
  ENSSSCG00045011586 UniProtKB/TrEMBL
  ENSSSCG00050065056 UniProtKB/TrEMBL
  ENSSSCG00055006938 UniProtKB/TrEMBL
  ENSSSCG00060012740 UniProtKB/TrEMBL
  ENSSSCG00065055166 UniProtKB/TrEMBL
  ENSSSCG00070030328 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023124 ENTREZGENE
  ENSSSCT00000023124.3 UniProtKB/TrEMBL
  ENSSSCT00015038399.1 UniProtKB/TrEMBL
  ENSSSCT00025076399.1 UniProtKB/TrEMBL
  ENSSSCT00030074701.1 UniProtKB/TrEMBL
  ENSSSCT00035024512.1 UniProtKB/TrEMBL
  ENSSSCT00040095058.1 UniProtKB/TrEMBL
  ENSSSCT00045019614.1 UniProtKB/TrEMBL
  ENSSSCT00050088606.1 UniProtKB/TrEMBL
  ENSSSCT00055013426.1 UniProtKB/TrEMBL
  ENSSSCT00060016733.1 UniProtKB/TrEMBL
  ENSSSCT00065075506.1 UniProtKB/TrEMBL
  ENSSSCT00070061051.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100310806 UniProtKB/TrEMBL
NCBI Gene IFN-ALPHAOMEGA ENTREZGENE
PANTHER INTERFERON ALPHA-2-LIKE UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A4X1WBX0 ENTREZGENE
  A0A8D0U0D2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YZ30 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 42 rows