CEP170B (centrosomal protein 170B) - Rat Genome Database

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Gene: CEP170B (centrosomal protein 170B) Sus scrofa
Analyze
Symbol: CEP170B
Name: centrosomal protein 170B
RGD ID: 14226803
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); congenital heart disease (ortholog); focal segmental glomerulosclerosis 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 170 kDa protein B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27131,200,726 - 131,225,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CEP170B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27131,200,726 - 131,225,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP170B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814104,864,513 - 104,896,747 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14104,865,268 - 104,896,747 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,331,605 - 105,363,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,402,699 - 104,434,132 (+)NCBINCBI36Build 36hg18NCBI36
Celera1485,386,210 - 85,417,492 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,529,219 - 85,556,332 (+)NCBIHuRef
CHM1_114105,269,452 - 105,300,570 (+)NCBICHM1_1
T2T-CHM13v2.01499,111,170 - 99,142,641 (+)NCBIT2T-CHM13v2.0
Cep170b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,687,950 - 112,713,026 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,686,889 - 112,713,026 (+)EnsemblGRCm39 Ensembl
GRCm3812112,721,514 - 112,746,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,720,455 - 112,746,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,960,385 - 113,984,802 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,170,042 - 113,194,399 (+)NCBIMGSCv36mm8
Celera12113,936,710 - 113,961,121 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.2NCBI
Cep170b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,602,707 - 137,627,750 (+)NCBIGRCr8
mRatBN7.26131,780,935 - 131,806,658 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6131,778,957 - 131,806,658 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06137,283,814 - 137,311,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,288,810 - 137,311,932 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,293,198 - 146,317,420 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,709,826 - 137,731,513 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6129,325,451 - 129,352,849 (+)NCBICelera
Cytogenetic Map6q32NCBI
Cep170b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555383,261,882 - 3,283,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555383,261,900 - 3,283,274 (+)NCBIChiLan1.0ChiLan1.0
CEP170B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,049,711 - 106,082,757 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,266,214 - 105,299,254 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,515,684 - 85,548,410 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,305,959 - 105,334,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14105,307,591 - 105,332,523 (+)Ensemblpanpan1.1panPan2
CEP170B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,374,536 - 72,399,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,877,926 - 71,903,669 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,647,605 - 72,673,546 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl872,650,002 - 72,860,168 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,332,072 - 72,356,585 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,374,059 - 72,399,912 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,773,550 - 72,799,306 (+)NCBIUU_Cfam_GSD_1.0
Cep170b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,702,462 - 1,725,404 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621531,382 - 554,166 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621531,419 - 554,390 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP170B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12482,796,088 - 82,826,636 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2482,796,127 - 82,826,789 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605370,222,224 - 70,252,809 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep170b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624734441,815 - 464,966 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624734442,432 - 466,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 1 3 4 1 23 2 2 3
Below cutoff 1 3 1 1

Sequence


Protein Domains
FHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002558 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025013010 UniProtKB/TrEMBL
  ENSSSCG00045014608 UniProtKB/TrEMBL
  ENSSSCG00060034956 UniProtKB/TrEMBL
  ENSSSCG00065063772 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002843.5 UniProtKB/TrEMBL
  ENSSSCT00000072038 ENTREZGENE
  ENSSSCT00000072038.2 UniProtKB/TrEMBL
  ENSSSCT00025017596.1 UniProtKB/TrEMBL
  ENSSSCT00045025051.1 UniProtKB/TrEMBL
  ENSSSCT00060047443.1 UniProtKB/TrEMBL
  ENSSSCT00065087595.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro CEP170_C UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene CEP170B ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 170 KDA UniProtKB/TrEMBL
  CENTROSOMAL PROTEIN OF 170 KDA PROTEIN B UniProtKB/TrEMBL
Pfam CEP170_C UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A5G2RBD0_PIG UniProtKB/TrEMBL
  A0A8D1HDR8 ENTREZGENE, UniProtKB/TrEMBL
  F1S971 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86564 ENTREZGENE