ATP6V0A2 (ATPase H+ transporting V0 subunit a2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ATP6V0A2 (ATPase H+ transporting V0 subunit a2) Sus scrofa
Analyze
Symbol: ATP6V0A2
Name: ATPase H+ transporting V0 subunit a2
RGD ID: 14221366
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN cellular response to increased oxygen levels (inferred); intracellular iron ion homeostasis (inferred); proton transmembrane transport (inferred); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIA (ortholog); congenital disorder of glycosylation Il (ortholog); FOUND IN acrosomal vesicle (inferred); focal adhesion (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 116 kDa subunit a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,250,400 - 29,297,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,944,213 - 30,989,982 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,250,400 - 29,297,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,944,213 - 30,989,982 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,712,353 - 123,761,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,712,353 - 123,761,755 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,196,900 - 124,246,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,762,818 - 122,810,394 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,721,744 - 122,769,321NCBI
Celera12123,793,121 - 123,842,693 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,158,054 - 121,207,491 (+)NCBIHuRef
CHM1_112124,017,815 - 124,067,195 (+)NCBICHM1_1
T2T-CHM13v2.012123,711,219 - 123,760,679 (+)NCBIT2T-CHM13v2.0
Atp6v0a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,767,117 - 124,801,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,766,641 - 124,801,519 (+)EnsemblGRCm39 Ensembl
GRCm385124,629,052 - 124,724,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,628,576 - 124,724,455 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,079,648 - 125,097,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375125,192,573 - 125,202,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,001,189 - 125,011,627 (+)NCBIMGSCv36mm8
Celera5121,704,480 - 121,735,509 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.7NCBI
Atp6v0a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,608,211 - 37,640,860 (-)NCBIGRCr8
mRatBN7.21231,947,220 - 31,979,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,822,733 - 32,007,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,129,001 - 33,158,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,740,320 - 33,769,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,792,188 - 32,821,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,368,321 - 37,398,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,363,906 - 37,425,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,238,423 - 39,269,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,061,611 - 33,092,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,941,066 - 32,949,116 (-)NCBI
Celera1233,639,711 - 33,670,024 (-)NCBICelera
Cytogenetic Map12q15NCBI
Atp6v0a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,311,434 - 5,337,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,311,434 - 5,337,684 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,787,497 - 131,834,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,783,904 - 131,831,213 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,297,959 - 121,343,294 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,522,886 - 125,569,858 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,522,886 - 125,569,858 (+)Ensemblpanpan1.1panPan2
ATP6V0A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,911,319 - 5,952,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,162,010 - 6,229,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,344,853 - 158,374,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,103,135 - 1,134,573 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,104,627 - 1,138,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111119,042,465 - 119,095,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11119,042,525 - 119,097,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,179,187 - 126,233,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,471,403 - 23,504,576 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,471,697 - 23,501,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V0A2
960 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000010708   ⟹   ENSSSCP00000010430
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000096884   ⟹   ENSSSCP00000078441
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1429,251,972 - 29,297,660 (-)Ensembl
RefSeq Acc Id: XM_013982778   ⟹   XP_013838232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11429,251,399 - 29,297,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072229   ⟹   XP_020927888
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11429,250,400 - 29,297,695 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020927888   ⟸   XM_021072229
- Peptide Label: isoform X1
- UniProtKB: A0A8D0ZNW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838232   ⟸   XM_013982778
- Peptide Label: isoform X2
- UniProtKB: F1RFL9 (UniProtKB/TrEMBL),   A0A4X1UMB6 (UniProtKB/TrEMBL),   A0A0B8RTW9 (UniProtKB/TrEMBL),   A0A480UG97 (UniProtKB/TrEMBL),   A0A8D0ZNW6 (UniProtKB/TrEMBL),   A0A8D2C4S1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010430   ⟸   ENSSSCT00000010708
Ensembl Acc Id: ENSSSCP00000078441   ⟸   ENSSSCT00000096884


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009766 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073194 UniProtKB/TrEMBL
  ENSSSCG00025015572 UniProtKB/TrEMBL
  ENSSSCG00030004424 UniProtKB/TrEMBL
  ENSSSCG00035039756 UniProtKB/TrEMBL
  ENSSSCG00040064311 UniProtKB/TrEMBL
  ENSSSCG00045039220 UniProtKB/TrEMBL
  ENSSSCG00050065519 UniProtKB/TrEMBL
  ENSSSCG00055002374 UniProtKB/TrEMBL
  ENSSSCG00060011045 UniProtKB/TrEMBL
  ENSSSCG00065032176 UniProtKB/TrEMBL
  ENSSSCG00070017933 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010708 ENTREZGENE
  ENSSSCT00000010708.6 UniProtKB/TrEMBL
  ENSSSCT00000096884.1 UniProtKB/TrEMBL
  ENSSSCT00015098245.1 UniProtKB/TrEMBL
  ENSSSCT00025020887.1 UniProtKB/TrEMBL
  ENSSSCT00030005891.1 UniProtKB/TrEMBL
  ENSSSCT00035052808.1 UniProtKB/TrEMBL
  ENSSSCT00040087794.1 UniProtKB/TrEMBL
  ENSSSCT00045068255.1 UniProtKB/TrEMBL
  ENSSSCT00050089243.1 UniProtKB/TrEMBL
  ENSSSCT00055004504.1 UniProtKB/TrEMBL
  ENSSSCT00060014410.1 UniProtKB/TrEMBL
  ENSSSCT00065043584.1 UniProtKB/TrEMBL
  ENSSSCT00070035402.1 UniProtKB/TrEMBL
InterPro V-ATPase_116kDa_su UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
KEGG Report ssc:100154525 UniProtKB/TrEMBL
NCBI Gene ATP6V0A2 ENTREZGENE
PANTHER PTHR11629 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A2 UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/TrEMBL
PIRSF ATP6V0A1 UniProtKB/TrEMBL
UniProt A0A0B8RTW9 ENTREZGENE
  A0A480UG97 ENTREZGENE
  A0A4X1UMB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZNW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YIM6_PIG UniProtKB/TrEMBL
  A0A8D2C4S1 ENTREZGENE, UniProtKB/TrEMBL
  F1RFL9 ENTREZGENE
UniProt Secondary A0A480UG97 UniProtKB/TrEMBL
  A0A8W4FHT7 UniProtKB/TrEMBL
  F1RFL9 UniProtKB/TrEMBL
VGNC ID VGNC:85664 ENTREZGENE