KCTD13 (potassium channel tetramerization domain containing 13) - Rat Genome Database

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Gene: KCTD13 (potassium channel tetramerization domain containing 13) Sus scrofa
Analyze
Symbol: KCTD13
Name: potassium channel tetramerization domain containing 13
RGD ID: 14190102
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN neural precursor cell proliferation (ortholog); positive regulation of DNA replication (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,124,573 - 18,141,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,124,628 - 18,141,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,628,899 - 18,633,347 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCTD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,124,573 - 18,141,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,124,628 - 18,141,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,628,899 - 18,633,347 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381629,906,339 - 29,926,226 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1629,905,012 - 29,926,236 (-)EnsemblGRCh38hg38GRCh38
GRCh371629,917,660 - 29,937,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361629,825,164 - 29,845,046 (-)NCBINCBI36Build 36hg18NCBI36
Build 341629,825,160 - 29,845,046NCBI
Celera1672,859,623 - 72,879,543 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1627,578,576 - 27,598,466 (-)NCBIHuRef
CHM1_11631,133,448 - 31,153,336 (-)NCBICHM1_1
T2T-CHM13v2.01630,188,975 - 30,208,863 (-)NCBIT2T-CHM13v2.0
Kctd13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,528,051 - 126,544,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,528,051 - 126,544,803 (+)EnsemblGRCm39 Ensembl
GRCm387126,928,840 - 126,947,897 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,928,879 - 126,945,631 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,072,393 - 134,089,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,720,027 - 126,736,757 (+)NCBIMGSCv36mm8
Celera7126,777,235 - 126,793,975 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.25NCBI
Kctd13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,965,073 - 190,983,381 (+)NCBIGRCr8
mRatBN7.21181,534,534 - 181,552,843 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,534,515 - 181,552,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,885,924 - 189,904,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,072,000 - 197,090,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,739,246 - 189,757,711 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,360,627 - 198,378,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,360,627 - 198,378,934 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,341,000 - 205,359,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,104,306 - 186,122,853 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,254,186 - 186,272,733 (+)NCBI
Celera1179,189,334 - 179,207,747 (+)NCBICelera
Cytogenetic Map1q37NCBI
Kctd13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,038,698 - 7,055,798 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,039,027 - 7,055,798 (+)NCBIChiLan1.0ChiLan1.0
KCTD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21830,656,138 - 30,676,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11635,549,886 - 35,569,775 (+)NCBINHGRI_mPanPan1
PanPan1.11630,273,849 - 30,279,675 (-)NCBIpanpan1.1PanPan1.1panPan2
KCTD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,945,541 - 17,959,421 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,946,062 - 17,959,232 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,522,325 - 19,536,205 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,079,274 - 18,093,154 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,079,288 - 18,093,185 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,878,693 - 17,892,572 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,794,360 - 17,808,237 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,109,695 - 18,123,577 (-)NCBIUU_Cfam_GSD_1.0
Kctd13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,447,027 - 124,459,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,544,851 - 12,559,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,544,899 - 12,557,485 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,727,963 - 26,764,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,728,168 - 26,764,910 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,782,404 - 2,803,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in KCTD13
531 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 3 5 2 23 2 3
Below cutoff 3 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000041486   ⟹   ENSSSCP00000042885
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,124,573 - 18,141,565 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000043623   ⟹   ENSSSCP00000058355
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,124,573 - 18,141,565 (-)Ensembl
RefSeq Acc Id: XM_021086431   ⟹   XP_020942090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1318,124,628 - 18,141,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086432   ⟹   XP_020942091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1318,126,615 - 18,141,589 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020942090   ⟸   XM_021086431
- Peptide Label: isoform X1
- UniProtKB: A0A287BQA2 (UniProtKB/TrEMBL),   A0A4X1U3L5 (UniProtKB/TrEMBL),   A0A8D0LSI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942091   ⟸   XM_021086432
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000042885   ⟸   ENSSSCT00000041486
RefSeq Acc Id: ENSSSCP00000058355   ⟸   ENSSSCT00000043623
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040888 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030633 UniProtKB/TrEMBL
  ENSSSCG00025060656 UniProtKB/TrEMBL
  ENSSSCG00035059361 UniProtKB/TrEMBL
  ENSSSCG00040043891 UniProtKB/TrEMBL
  ENSSSCG00045019002 UniProtKB/TrEMBL
  ENSSSCG00050072981 UniProtKB/TrEMBL
  ENSSSCG00055030060 UniProtKB/TrEMBL
  ENSSSCG00060072654 UniProtKB/TrEMBL
  ENSSSCG00065025451 UniProtKB/TrEMBL
  ENSSSCG00070013752 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043623 ENTREZGENE
  ENSSSCT00000043623.2 UniProtKB/TrEMBL
  ENSSSCT00005048822.1 UniProtKB/TrEMBL
  ENSSSCT00025083033.1 UniProtKB/TrEMBL
  ENSSSCT00035079508.1 UniProtKB/TrEMBL
  ENSSSCT00040058868.1 UniProtKB/TrEMBL
  ENSSSCT00045032333.1 UniProtKB/TrEMBL
  ENSSSCT00050099683.1 UniProtKB/TrEMBL
  ENSSSCT00055059776.1 UniProtKB/TrEMBL
  ENSSSCT00060099331.1 UniProtKB/TrEMBL
  ENSSSCT00065034054.1 UniProtKB/TrEMBL
  ENSSSCT00070026852.1 UniProtKB/TrEMBL
  ENSSSCT00070026855.1 UniProtKB/TrEMBL
InterPro BACURD1-3 UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
NCBI Gene KCTD13 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN 1 UniProtKB/TrEMBL
  PTHR11145 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A287BQA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U306_PIG UniProtKB/TrEMBL
  A0A4X1U3L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LSI6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89393 ENTREZGENE