CHST1 (carbohydrate sulfotransferase 1)

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Gene: CHST1 (carbohydrate sulfotransferase 1) Sus scrofa

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Symbol:

CHST1

Name:

carbohydrate sulfotransferase 1

RGD ID:

14177623

Description:

ENCODES a protein that exhibits keratan sulfotransferase activity (inferred); sulfotransferase activity (inferred); transferase activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); galactose metabolic process (inferred); keratan sulfate biosynthetic process (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	16,772,262 - 16,789,027 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	16,772,210 - 16,789,031 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	18,178,340 - 18,195,423 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

galactose metabolic process (IEA)

keratan sulfate biosynthetic process (IEA)

keratan sulfate metabolic process (IBA,IEA)

N-acetylglucosamine metabolic process (IBA)

sulfur compound metabolic process (IEA)

Cellular Component

Golgi apparatus (IEA)

Golgi membrane (IEA)

membrane (IEA)

trans-Golgi network (IBA)

Molecular Function

keratan sulfotransferase activity (IBA,IEA)

N-acetylglucosamine 6-O-sulfotransferase activity (IBA)

protein binding (ISO)

sulfotransferase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CHST1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	16,772,262 - 16,789,027 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	16,772,210 - 16,789,031 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	18,178,340 - 18,195,423 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHST1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	45,647,689 - 45,665,622 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	45,647,689 - 45,665,622 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	45,669,239 - 45,687,172 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	45,627,003 - 45,643,748 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	45,627,002 - 45,643,748	NCBI
Celera	11	45,817,781 - 45,834,528 (-)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	45,377,231 - 45,382,150 (-)	NCBI		HuRef
CHM1_1	11	45,666,565 - 45,684,532 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	45,803,398 - 45,821,330 (-)	NCBI		T2T-CHM13v2.0

Chst1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	92,429,978 - 92,445,597 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	92,430,052 - 92,445,595 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	92,599,632 - 92,615,252 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	92,599,707 - 92,615,250 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	92,439,864 - 92,455,409 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	92,412,616 - 92,416,089 (+)	NCBI		MGSCv36	mm8
Celera	2	93,994,573 - 94,009,859 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	51.17	NCBI

Chst1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	99,003,987 - 99,030,214 (+)	NCBI		GRCr8
mRatBN7.2	3	78,552,059 - 78,574,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,548,525 - 78,574,883 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	82,035,917 - 82,050,727 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	90,634,960 - 90,649,770 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	88,485,799 - 88,500,669 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	81,441,785 - 81,512,829 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,498,022 - 81,512,807 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	88,201,573 - 88,216,380 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	76,994,089 - 77,008,874 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	76,890,516 - 76,905,302 (+)	NCBI
Celera	3	77,761,117 - 77,775,904 (+)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

Chst1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	2,269,791 - 2,274,714 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	2,269,791 - 2,274,714 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHST1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	47,859,034 - 47,875,769 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	47,865,617 - 47,882,361 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	45,604,605 - 45,621,332 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	46,096,894 - 46,106,729 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CHST1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	43,734,469 - 43,739,640 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	42,451,116 - 42,467,610 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	44,378,514 - 44,395,022 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	44,378,537 - 44,395,019 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	43,863,268 - 43,879,759 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	43,416,770 - 43,433,264 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	44,148,886 - 44,165,391 (+)	NCBI		UU_Cfam_GSD_1.0

Chst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	21,206,205 - 21,212,818 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	3,320,957 - 3,324,454 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	3,318,821 - 3,324,460 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHST1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	19,678,972 - 19,696,466 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	19,694,243 - 19,695,478 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	116,949,320 - 116,966,120 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chst1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	2,798,715 - 2,803,082 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	2,788,208 - 2,803,093 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CHST1
561 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	4	23	3	5	11	12	23	1	5	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005660969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005660970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013994379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01129302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000014497 ⟹ ENSSSCP00000014105

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	16,772,262 - 16,789,027 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000050439 ⟹ ENSSSCP00000044553

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	16,775,809 - 16,789,029 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000078007 ⟹ ENSSSCP00000062861

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	16,772,316 - 16,789,024 (+)	Ensembl

RefSeq Acc Id:

XM_005660969 ⟹ XP_005661026

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	16,772,210 - 16,789,031 (+)	NCBI

Sequence:

show sequence

GGGGGTGGAGCCCGGACCGCAGCGCCCGCCGCTCTCTCGGCTCTGTAGCCCGCCGCCGCCGCCG
CCGCTGCTGCTGCTGCTCTGGGCTCGGGACGCAGGGCGGGCAGGCGGGCGCTCGGTGAAGCTCC
AGCGCCTGCGGCTGCTGCTCTCCTCCGGCGCCCCCGGCTGCGGCGCTCTGGGTCCCAGCCCCCG
GCCCAGCGGCCCTGGGGCCCTCGCGCTCGTATCCCCGGTCCCGCGTCCTACCCCAGAGAACGCT
CTCCGCTGGCCGAGCCGTCCCGGGCTCGCGCCCCGGGGCCATGCAGAGGGGCCCGTGAGGGGCG
CGCGGAGGCGGTGTAAGAGGAGGGAGGAGGGAGGCCGAGGAGGAGGGCGCGGGAGGCGGAGGAT
GCCGCCGCCGTCTCCGCCACCGCCGCCCGCCGGCCCCCGGCGAGCCTGACTCCAGACCCGAGGA
TGGAGCCGGCGCTGGGCGCTGCAGCGGCTCCCGGTGCGCCCCGGACCAGGTAGCCATTCTCCTC
TCTCCGTGCGGTTGGAAGACCTCCTTTCCTGGCTGGCCCTGCCTGGCGGGCATCAGTGTGTGGG
CTGTCTCGACTGAGCTGCCCTTTCCGCCTGGAGATCTGGGTCTGCCGCAGGGCTACGGCACAGG
CTGTGACAGCTGGCTAGACCTGGAGGCTGTGGATTCTCCAGCTTGGAACAGCCCCTCTTTGATC
TCACATGGTGGAGACGCAGCCCCATGAAGGTGCCCAGCCATGCAATGTTCCTGGAAGGCGGTCC
TCCTCCTTGCGCTGGCCTCCATCGCCATCCAGTACACGGCCATCCGCACCTTCACCGCCAAGTC
CTTCCACACCTGCCCGGGGCTGGCGGAAGCGGGGCTGGCCGAGCGGCTGTGCGAGGAGGGCCCG
ACCTTCGCCTATAACCTCTCCCGCAAGACCCACATCCTCATCCTGGCCACCACCCGCAGCGGCT
CCTCCTTCGTGGGCCAGCTCTTCAACCAGCACCTGGACGTCTTCTACCTGTTCGAGCCCCTCTA
CCACGTCCAGAACACGCTCATCCCTCGCTTCACCCAGGGCAAGAGCCCCGCGGACCGGCGGGTC
ATGCTGGGCGCCAGCCGCGACCTGCTGAGGAGCCTCTACGACTGTGACCTCTATTTCCTGGAGA
ACTACATCAAGCCGCCGCCCGTCAACCACACCACCGACCGCATCTTCCGCCGCGGGGCCAGCAG
GGTCCTGTGCTCGCGCCCCGTGTGCGACCCTCCCGGCTCCGCGGACCTGGTGCTGGAGGAGGGG
GACTGCGTGCGCAAGTGCGGCTTGCTGAACTTGACCCTGGCGGCCGAGGCCTGCCGCGAGCGCA
GCCACGTGGCCATTAAGACGGTGCGCGTGCCCGAGGTAAACGACCTGCGGGCCCTGGTTGAAGA
CCCCCGGTTGAACCTCAAGGTCATCCAGCTGGTCCGAGACCCGCGTGGCATCCTGGCTTCCCGC
AGCGAGACCTTCCGCGACACGTACCGGCTCTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCT
ACAACCTGGACGTGACGCAGCTGACCACGGTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGG
CCTCATGCGGCCCGCGTGGCTCAAGGGCAAGTACATGTTGGTGCGCTACGAGGACCTGGCCAGG
AACCCCATGAAGAAGACCGAGGAGATCTACGGTTTCCTGGGCATCCCCTTGGACAGCCACGTGG
CGCGCTGGATCCAGAACAACACGCGGGGCGACCCCACCTTGGGCAAGCACAAATACGGCACCGT
GCGCAACTCGGCGGCCACAGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTT
GCCCAGAACGCCTGTCAGCGGGTACTGGCGCAGCTGGGCTACAAGATGGCCAGCTCCGAGGAGG
AGCTCAAAAACCCTTCCATCAGCCTGGTGGAGGAGCGGGACTTCCGCCCCTTCTCGTGACCGGG
GCTGCGTGGTGGGGGCGAGGAGCACATGGTGTCGGTTTTGATAAAAGGGACCGTTTTTAACTGT
TGCCTTATTTCCCCCCCGCCCTTTGTCACCCTGTCTTTGTGTCCTCCCGGCCCCCTGTCCACCT
CCTGTCCGCCCCTCACTTCCTCCTGCCTCTCTTTGTCTCTGAAATTTGCACTATGTCTTGGACA
GGAATCCCCGGGGCAGAGGGGGCGGGAAATGGGGTAGAGCCCCCGCCCCGCTCCGTTCAGACAC
ACGGATGTTGGGGCTCTGGTGGATGGTGACAATGTTTACAAGCACCACACTTACACTTTTGCAT
ACACACACGCATACACACACGTGGGGGCCGGCGAGGAGAGACACCCCCAACCACACAACTTCTG
AAGCTTTTCGAATGGGCACGTGGTCAGGGTATGGTAGTGTTTGCACTGTCTTACTTCTGGAAGG
TAAGAGGTTAAAAACAAAAAGGCCACCCCTCTCTAATTTATGAATGGTGTCTATCCTTCCCCAT
CTTGCTTCCGCCCCAATGCCCAGGCCCCCGGAGCAGAGAAACTGCCCCCTCCTGCCCGCCCTTG
CCTGTCGGTGAGCAGGTTTTTACTGTGAGGTGAATGTGGACTTTGTTTATTTTTTCCAAGTCTG
TGGCAATGCTGTTTGTCTGTCTGTCTGAGTCTTGTGGCTGCCCCTGGACCGATGATGGCTGATA
AATATTATGGGTTTCGGATTGATCTTGGGGTTCATCTCGTGATATTTCTCTGTGCCAAAAAAGA
AAACAAAACAAAACAAGTGGTTCAGTTTGCTAAATGAGCATTGAAATGCTTTATCTGTGTTTTC
TGTAAATAAAAGAGTGCAATAACA

hide sequence

RefSeq Acc Id:

XM_005660970 ⟹ XP_005661027

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	16,772,293 - 16,789,031 (+)	NCBI

Sequence:

show sequence

GGGCTCGGGACGCAGGGCGGGCAGGCGGGCGCTCGGTGAAGCTCCAGCGCCTGCGGCTGCTGCT
CTCCTCCGGCGCCCCCGGCTGCGGCGCTCTGGGTCCCAGCCCCCGGCCCAGCGGCCCTGGGGCC
CTCGCGCTCGTATCCCCGGTCCCGCGTCCTACCCCAGAGAACGCTCTCCGCTGGCCGAGCCGTC
CCGGGCTCGCGCCCCGGGGCCATGCAGAGGGGCCCGTGAGGGGCGCGCGGAGGCGGTGTAAGAG
GAGGGAGGAGGGAGGCCGAGGAGGAGGGCGCGGGAGGCGGAGGATGCCGCCGCCGTCTCCGCCA
CCGCCGCCCGCCGGCCCCCGGCGAGCCTGACTCCAGACCCGAGGATGGAGCCGGCGCTGGGCGC
TGCAGCGGCTCCCGGTGCGCCCCGGACCAGTTTCAGGTAGCCATTCTCCTCTCTCCGTGCGGTT
GGAAGACCTCCTTTCCTGGCTGGCCCTGCCTGGCGGGCATCAGTGTGTGGGCTGTCTCGACTGA
GCTGCCCTTTCCGCCTGGAGATCTGGGTCTGCCGCAGGGCTACGGCACAGGCTGTGACAGCTGG
CTAGACCTGGAGGCTGTGGATTCTCCAGCTTGGAACAGCCCCTCTTTGATCTCACATGGTGGAG
ACGCAGCCCCATGAAGGTGCCCAGCCATGCAATGTTCCTGGAAGGCGGTCCTCCTCCTTGCGCT
GGCCTCCATCGCCATCCAGTACACGGCCATCCGCACCTTCACCGCCAAGTCCTTCCACACCTGC
CCGGGGCTGGCGGAAGCGGGGCTGGCCGAGCGGCTGTGCGAGGAGGGCCCGACCTTCGCCTATA
ACCTCTCCCGCAAGACCCACATCCTCATCCTGGCCACCACCCGCAGCGGCTCCTCCTTCGTGGG
CCAGCTCTTCAACCAGCACCTGGACGTCTTCTACCTGTTCGAGCCCCTCTACCACGTCCAGAAC
ACGCTCATCCCTCGCTTCACCCAGGGCAAGAGCCCCGCGGACCGGCGGGTCATGCTGGGCGCCA
GCCGCGACCTGCTGAGGAGCCTCTACGACTGTGACCTCTATTTCCTGGAGAACTACATCAAGCC
GCCGCCCGTCAACCACACCACCGACCGCATCTTCCGCCGCGGGGCCAGCAGGGTCCTGTGCTCG
CGCCCCGTGTGCGACCCTCCCGGCTCCGCGGACCTGGTGCTGGAGGAGGGGGACTGCGTGCGCA
AGTGCGGCTTGCTGAACTTGACCCTGGCGGCCGAGGCCTGCCGCGAGCGCAGCCACGTGGCCAT
TAAGACGGTGCGCGTGCCCGAGGTAAACGACCTGCGGGCCCTGGTTGAAGACCCCCGGTTGAAC
CTCAAGGTCATCCAGCTGGTCCGAGACCCGCGTGGCATCCTGGCTTCCCGCAGCGAGACCTTCC
GCGACACGTACCGGCTCTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCTACAACCTGGACGT
GACGCAGCTGACCACGGTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGGCCTCATGCGGCCC
GCGTGGCTCAAGGGCAAGTACATGTTGGTGCGCTACGAGGACCTGGCCAGGAACCCCATGAAGA
AGACCGAGGAGATCTACGGTTTCCTGGGCATCCCCTTGGACAGCCACGTGGCGCGCTGGATCCA
GAACAACACGCGGGGCGACCCCACCTTGGGCAAGCACAAATACGGCACCGTGCGCAACTCGGCG
GCCACAGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGCCCAGAACGCCT
GTCAGCGGGTACTGGCGCAGCTGGGCTACAAGATGGCCAGCTCCGAGGAGGAGCTCAAAAACCC
TTCCATCAGCCTGGTGGAGGAGCGGGACTTCCGCCCCTTCTCGTGACCGGGGCTGCGTGGTGGG
GGCGAGGAGCACATGGTGTCGGTTTTGATAAAAGGGACCGTTTTTAACTGTTGCCTTATTTCCC
CCCCGCCCTTTGTCACCCTGTCTTTGTGTCCTCCCGGCCCCCTGTCCACCTCCTGTCCGCCCCT
CACTTCCTCCTGCCTCTCTTTGTCTCTGAAATTTGCACTATGTCTTGGACAGGAATCCCCGGGG
CAGAGGGGGCGGGAAATGGGGTAGAGCCCCCGCCCCGCTCCGTTCAGACACACGGATGTTGGGG
CTCTGGTGGATGGTGACAATGTTTACAAGCACCACACTTACACTTTTGCATACACACACGCATA
CACACACGTGGGGGCCGGCGAGGAGAGACACCCCCAACCACACAACTTCTGAAGCTTTTCGAAT
GGGCACGTGGTCAGGGTATGGTAGTGTTTGCACTGTCTTACTTCTGGAAGGTAAGAGGTTAAAA
ACAAAAAGGCCACCCCTCTCTAATTTATGAATGGTGTCTATCCTTCCCCATCTTGCTTCCGCCC
CAATGCCCAGGCCCCCGGAGCAGAGAAACTGCCCCCTCCTGCCCGCCCTTGCCTGTCGGTGAGC
AGGTTTTTACTGTGAGGTGAATGTGGACTTTGTTTATTTTTTCCAAGTCTGTGGCAATGCTGTT
TGTCTGTCTGTCTGAGTCTTGTGGCTGCCCCTGGACCGATGATGGCTGATAAATATTATGGGTT
TCGGATTGATCTTGGGGTTCATCTCGTGATATTTCTCTGTGCCAAAAAAGAAAACAAAACAAAA
CAAGTGGTTCAGTTTGCTAAATGAGCATTGAAATGCTTTATCTGTGTTTTCTGTAAATAAAAGA
GTGCAATAACA

hide sequence

RefSeq Acc Id:

XM_013994379 ⟹ XP_013849833

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	16,776,915 - 16,789,031 (+)	NCBI

Sequence:

show sequence

GCCACTGGGGGTGGGAGATGGACGGAGGGCCTGGCGCTCTCCCTCAGGGATTCTGTAGGCAGAT
GAGGATGGCAGGCAGGCAGGTCTGATGCTGACCTGCGGGAGGCACCACTGAGCCAGTGCCTGTA
CCATGTGCTATGCTAAGCCCTTCACCTGTCCTGGGAGGTGGGCGTGATCTCCCCTTCCCAGGGG
ACCTGGTAAGGTCGTGGGAGGGTAAGGCTGTCTAGGAACCCAGGGTCTGGGTTTCAGTCTCTGC
TGAGGCTCCTAACCGCTTAGGGCACCTACAGGGTCAGGAGAGGAACCTGGGCGCTGCAGACCAA
GGGTTTCGGGGGAAGGATGAGAAGGCTTTAGGGAGAACTTTGGGCAGGCGAGGCCCTTGCTGCA
TATGCACCTCGCACAGGGCACCTGGTAGCCTGATTCCGTTCCCTGCGCTGCCGCTTCTCAGGTC
TGGCAGCAAGTCACTTAACCTCTGCGAGCCTCATCCGTGAGCAGCTGCCATTGCATCTTCTCCA
GGAGGTCCTTGTTGACGCGGGGACAGGGGATCCTCCTCATCTGGTCATGTTCCCAGTGAGTGTC
GCTCCCGAAGGCCTTCTCAGACGGGTGACAGAGGACAGACAGGTTGAGCCGCCTGGCATTCTTG
GGACCAGCTGTGAGCTGGTGGTAGCCATTCTCCTCTCTCCGTGCGGTTGGAAGACCTCCTTTCC
TGGCTGGCCCTGCCTGGCGGGCATCAGTGTGTGGGCTGTCTCGACTGAGCTGCCCTTTCCGCCT
GGAGATCTGGGTCTGCCGCAGGGCTACGGCACAGGCTGTGACAGCTGGCTAGACCTGGAGGCTG
TGGATTCTCCAGCTTGGAACAGCCCCTCTTTGATCTCACATGGTGGAGACGCAGCCCCATGAAG
GTGCCCAGCCATGCAATGTTCCTGGAAGGCGGTCCTCCTCCTTGCGCTGGCCTCCATCGCCATC
CAGTACACGGCCATCCGCACCTTCACCGCCAAGTCCTTCCACACCTGCCCGGGGCTGGCGGAAG
CGGGGCTGGCCGAGCGGCTGTGCGAGGAGGGCCCGACCTTCGCCTATAACCTCTCCCGCAAGAC
CCACATCCTCATCCTGGCCACCACCCGCAGCGGCTCCTCCTTCGTGGGCCAGCTCTTCAACCAG
CACCTGGACGTCTTCTACCTGTTCGAGCCCCTCTACCACGTCCAGAACACGCTCATCCCTCGCT
TCACCCAGGGCAAGAGCCCCGCGGACCGGCGGGTCATGCTGGGCGCCAGCCGCGACCTGCTGAG
GAGCCTCTACGACTGTGACCTCTATTTCCTGGAGAACTACATCAAGCCGCCGCCCGTCAACCAC
ACCACCGACCGCATCTTCCGCCGCGGGGCCAGCAGGGTCCTGTGCTCGCGCCCCGTGTGCGACC
CTCCCGGCTCCGCGGACCTGGTGCTGGAGGAGGGGGACTGCGTGCGCAAGTGCGGCTTGCTGAA
CTTGACCCTGGCGGCCGAGGCCTGCCGCGAGCGCAGCCACGTGGCCATTAAGACGGTGCGCGTG
CCCGAGGTAAACGACCTGCGGGCCCTGGTTGAAGACCCCCGGTTGAACCTCAAGGTCATCCAGC
TGGTCCGAGACCCGCGTGGCATCCTGGCTTCCCGCAGCGAGACCTTCCGCGACACGTACCGGCT
CTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCTACAACCTGGACGTGACGCAGCTGACCACG
GTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGGCCTCATGCGGCCCGCGTGGCTCAAGGGCA
AGTACATGTTGGTGCGCTACGAGGACCTGGCCAGGAACCCCATGAAGAAGACCGAGGAGATCTA
CGGTTTCCTGGGCATCCCCTTGGACAGCCACGTGGCGCGCTGGATCCAGAACAACACGCGGGGC
GACCCCACCTTGGGCAAGCACAAATACGGCACCGTGCGCAACTCGGCGGCCACAGCCGAGAAGT
GGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGCCCAGAACGCCTGTCAGCGGGTACTGGC
GCAGCTGGGCTACAAGATGGCCAGCTCCGAGGAGGAGCTCAAAAACCCTTCCATCAGCCTGGTG
GAGGAGCGGGACTTCCGCCCCTTCTCGTGACCGGGGCTGCGTGGTGGGGGCGAGGAGCACATGG
TGTCGGTTTTGATAAAAGGGACCGTTTTTAACTGTTGCCTTATTTCCCCCCCGCCCTTTGTCAC
CCTGTCTTTGTGTCCTCCCGGCCCCCTGTCCACCTCCTGTCCGCCCCTCACTTCCTCCTGCCTC
TCTTTGTCTCTGAAATTTGCACTATGTCTTGGACAGGAATCCCCGGGGCAGAGGGGGCGGGAAA
TGGGGTAGAGCCCCCGCCCCGCTCCGTTCAGACACACGGATGTTGGGGCTCTGGTGGATGGTGA
CAATGTTTACAAGCACCACACTTACACTTTTGCATACACACACGCATACACACACGTGGGGGCC
GGCGAGGAGAGACACCCCCAACCACACAACTTCTGAAGCTTTTCGAATGGGCACGTGGTCAGGG
TATGGTAGTGTTTGCACTGTCTTACTTCTGGAAGGTAAGAGGTTAAAAACAAAAAGGCCACCCC
TCTCTAATTTATGAATGGTGTCTATCCTTCCCCATCTTGCTTCCGCCCCAATGCCCAGGCCCCC
GGAGCAGAGAAACTGCCCCCTCCTGCCCGCCCTTGCCTGTCGGTGAGCAGGTTTTTACTGTGAG
GTGAATGTGGACTTTGTTTATTTTTTCCAAGTCTGTGGCAATGCTGTTTGTCTGTCTGTCTGAG
TCTTGTGGCTGCCCCTGGACCGATGATGGCTGATAAATATTATGGGTTTCGGATTGATCTTGGG
GTTCATCTCGTGATATTTCTCTGTGCCAAAAAAGAAAACAAAACAAAACAAGTGGTTCAGTTTG
CTAAATGAGCATTGAAATGCTTTATCTGTGTTTTCTGTAAATAAAAGAGTGCAATAACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005661026	(Get FASTA)	NCBI Sequence Viewer
	XP_005661027	(Get FASTA)	NCBI Sequence Viewer
	XP_013849833	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000014105
	ENSSSCP00000014105.1
	ENSSSCP00000062861.1
	ENSSSCP00015011984.1
	ENSSSCP00015011996.1
	ENSSSCP00025017960.1
	ENSSSCP00025017981.1
	ENSSSCP00025018005.1
	ENSSSCP00025018036.1
	ENSSSCP00030028583.1
	ENSSSCP00030028592.1
	ENSSSCP00030028602.1
	ENSSSCP00035046982.1
	ENSSSCP00035046989.1
	ENSSSCP00035047001.1
	ENSSSCP00040030401.1
	ENSSSCP00040030429.1
	ENSSSCP00040030464.1
	ENSSSCP00045040620.1
	ENSSSCP00045040649.1
	ENSSSCP00045040672.1
	ENSSSCP00045040709.1
	ENSSSCP00050000523.1
	ENSSSCP00050000530.1
	ENSSSCP00050000539.1
	ENSSSCP00050000548.1
	ENSSSCP00055037695.1
	ENSSSCP00055037716.1
	ENSSSCP00060007792.1
	ENSSSCP00060007794.1
	ENSSSCP00060007796.1
	ENSSSCP00065045111.1
	ENSSSCP00065045115.1
	ENSSSCP00065045118.1
	ENSSSCP00065045121.1
	ENSSSCP00070000712.1

RefSeq Acc Id:

XP_005661026 ⟸ XM_005660969

- UniProtKB:

F1SHJ6 (UniProtKB/TrEMBL), A0A4X1SF01 (UniProtKB/TrEMBL), A0A8D1D6I6 (UniProtKB/TrEMBL), A0A8D1J801 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEEGPTFAYNLSRKTHIL
ILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY
DCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGSADLVLEEGDCVRKCGLLNLTL
AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL
WYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPAWLKGKYMLVRYEDLARNPMKKTEEIYGFL
GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLG
YKMASSEEELKNPSISLVEERDFRPFS

hide sequence

RefSeq Acc Id:

XP_005661027 ⟸ XM_005660970

- UniProtKB:

F1SHJ6 (UniProtKB/TrEMBL), A0A4X1SF01 (UniProtKB/TrEMBL), A0A8D1D6I6 (UniProtKB/TrEMBL), A0A8D1J801 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEEGPTFAYNLSRKTHIL
ILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY
DCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGSADLVLEEGDCVRKCGLLNLTL
AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL
WYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPAWLKGKYMLVRYEDLARNPMKKTEEIYGFL
GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLG
YKMASSEEELKNPSISLVEERDFRPFS

hide sequence

RefSeq Acc Id:

XP_013849833 ⟸ XM_013994379

- UniProtKB:

F1SHJ6 (UniProtKB/TrEMBL), A0A4X1SF01 (UniProtKB/TrEMBL), A0A8D1D6I6 (UniProtKB/TrEMBL), A0A8D1J801 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEEGPTFAYNLSRKTHIL
ILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY
DCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGSADLVLEEGDCVRKCGLLNLTL
AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL
WYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPAWLKGKYMLVRYEDLARNPMKKTEEIYGFL
GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLG
YKMASSEEELKNPSISLVEERDFRPFS

hide sequence

Ensembl Acc Id:

ENSSSCP00000044553 ⟸ ENSSSCT00000050439

Ensembl Acc Id:

ENSSSCP00000062861 ⟸ ENSSSCT00000078007

Ensembl Acc Id:

ENSSSCP00000014105 ⟸ ENSSSCT00000014497

Protein Domains

Sulfotransferase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000013273	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015022843	UniProtKB/TrEMBL
	ENSSSCG00025031061	UniProtKB/TrEMBL
	ENSSSCG00030044812	UniProtKB/TrEMBL
	ENSSSCG00035079350	UniProtKB/TrEMBL
	ENSSSCG00040052747	UniProtKB/TrEMBL
	ENSSSCG00045033999	UniProtKB/TrEMBL
	ENSSSCG00050001485	UniProtKB/TrEMBL
	ENSSSCG00055023996	UniProtKB/TrEMBL
	ENSSSCG00060014529	UniProtKB/TrEMBL
	ENSSSCG00065074286	UniProtKB/TrEMBL
	ENSSSCG00070000438	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000014497	ENTREZGENE
	ENSSSCT00000014497.4	UniProtKB/TrEMBL
	ENSSSCT00000078007.2	UniProtKB/TrEMBL
	ENSSSCT00015030262.1	UniProtKB/TrEMBL
	ENSSSCT00015030290.1	UniProtKB/TrEMBL
	ENSSSCT00025042201.1	UniProtKB/TrEMBL
	ENSSSCT00025042246.1	UniProtKB/TrEMBL
	ENSSSCT00025042306.1	UniProtKB/TrEMBL
	ENSSSCT00025042376.1	UniProtKB/TrEMBL
	ENSSSCT00030062503.1	UniProtKB/TrEMBL
	ENSSSCT00030062524.1	UniProtKB/TrEMBL
	ENSSSCT00030062545.1	UniProtKB/TrEMBL
	ENSSSCT00035108443.1	UniProtKB/TrEMBL
	ENSSSCT00035108454.1	UniProtKB/TrEMBL
	ENSSSCT00035108472.1	UniProtKB/TrEMBL
	ENSSSCT00040071273.1	UniProtKB/TrEMBL
	ENSSSCT00040071333.1	UniProtKB/TrEMBL
	ENSSSCT00040071393.1	UniProtKB/TrEMBL
	ENSSSCT00045058111.1	UniProtKB/TrEMBL
	ENSSSCT00045058145.1	UniProtKB/TrEMBL
	ENSSSCT00045058181.1	UniProtKB/TrEMBL
	ENSSSCT00045058232.1	UniProtKB/TrEMBL
	ENSSSCT00050001798.1	UniProtKB/TrEMBL
	ENSSSCT00050001811.1	UniProtKB/TrEMBL
	ENSSSCT00050001830.1	UniProtKB/TrEMBL
	ENSSSCT00050001848.1	UniProtKB/TrEMBL
	ENSSSCT00055047238.1	UniProtKB/TrEMBL
	ENSSSCT00055047263.1	UniProtKB/TrEMBL
	ENSSSCT00060019234.1	UniProtKB/TrEMBL
	ENSSSCT00060019237.1	UniProtKB/TrEMBL
	ENSSSCT00060019239.1	UniProtKB/TrEMBL
	ENSSSCT00065102298.1	UniProtKB/TrEMBL
	ENSSSCT00065102306.1	UniProtKB/TrEMBL
	ENSSSCT00065102310.1	UniProtKB/TrEMBL
	ENSSSCT00065102314.1	UniProtKB/TrEMBL
	ENSSSCT00070000811.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Carbohydrate_sulfotransferase	UniProtKB/TrEMBL
	Gal/GlcNAc/GalNAc_ST	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Sulfotransferase_dom	UniProtKB/TrEMBL
KEGG Report	ssc:100519885	UniProtKB/TrEMBL
NCBI Gene	CHST1	ENTREZGENE
PANTHER	CARBOHYDRATE SULFOTRANSFERASE	UniProtKB/TrEMBL
	CARBOHYDRATE SULFOTRANSFERASE 1	UniProtKB/TrEMBL
Pfam	Sulfotransfer_1	UniProtKB/TrEMBL
PIRSF	Carbohydrate_sulfotransferase	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A4X1SF01	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1D6I6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1J801	ENTREZGENE, UniProtKB/TrEMBL
	F1SHJ6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86673	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar