Chst1 (carbohydrate sulfotransferase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Chst1 (carbohydrate sulfotransferase 1) Rattus norvegicus
Analyze
Symbol: Chst1
Name: carbohydrate sulfotransferase 1
RGD ID: 1308142
Description: Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process; galactose metabolic process; and keratan sulfate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Orthologous to human CHST1 (carbohydrate sulfotransferase 1); PARTICIPATES IN keratan sulfate biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carbohydrate (keratan sulfate Gal-6) sulfotransferase 1; galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1; GST-1; keratan sulfate Gal-6 sulfotransferase; KS6ST; KSGal6ST; KSST; LOC295934
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2378,552,059 - 78,574,736 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl378,548,525 - 78,574,883 (+)Ensembl
Rnor_6.0381,441,785 - 81,512,829 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,498,022 - 81,512,807 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0388,201,573 - 88,216,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,994,089 - 77,008,874 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1376,890,516 - 76,905,302 (+)NCBI
Celera377,761,117 - 77,775,904 (+)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9405439   PMID:10330415   PMID:12477932   PMID:15489334   PMID:16751776   PMID:16778019  


Genomics

Comparative Map Data
Chst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2378,552,059 - 78,574,736 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl378,548,525 - 78,574,883 (+)Ensembl
Rnor_6.0381,441,785 - 81,512,829 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,498,022 - 81,512,807 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0388,201,573 - 88,216,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,994,089 - 77,008,874 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1376,890,516 - 76,905,302 (+)NCBI
Celera377,761,117 - 77,775,904 (+)NCBICelera
Cytogenetic Map3q31NCBI
CHST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,647,689 - 45,665,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1145,647,689 - 45,665,622 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,669,239 - 45,687,172 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,627,003 - 45,643,748 (-)NCBINCBI36hg18NCBI36
Build 341145,627,002 - 45,643,748NCBI
Celera1145,817,781 - 45,834,528 (-)NCBI
Cytogenetic Map11p11.2NCBI
HuRef1145,377,231 - 45,382,150 (-)NCBIHuRef
CHM1_11145,666,565 - 45,684,532 (-)NCBICHM1_1
T2T-CHM13v2.01145,803,398 - 45,821,330 (-)NCBI
Chst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39292,429,978 - 92,445,597 (+)NCBIGRCm39mm39
GRCm39 Ensembl292,430,052 - 92,445,595 (+)Ensembl
GRCm38292,599,632 - 92,615,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl292,599,707 - 92,615,250 (+)EnsemblGRCm38mm10GRCm38
MGSCv37292,439,864 - 92,455,409 (+)NCBIGRCm37mm9NCBIm37
MGSCv36292,412,616 - 92,416,089 (+)NCBImm8
Celera293,994,573 - 94,009,859 (+)NCBICelera
Cytogenetic Map2E1NCBI
Chst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554222,269,791 - 2,274,714 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554222,269,791 - 2,274,714 (+)NCBIChiLan1.0ChiLan1.0
CHST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11146,096,894 - 46,106,729 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01145,604,605 - 45,621,332 (-)NCBIMhudiblu_PPA_v0panPan3
CHST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11843,734,469 - 43,739,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1842,451,116 - 42,467,610 (+)NCBI
ROS_Cfam_1.01844,378,514 - 44,395,022 (+)NCBI
ROS_Cfam_1.0 Ensembl1844,378,537 - 44,395,019 (+)Ensembl
UMICH_Zoey_3.11843,863,268 - 43,879,759 (+)NCBI
UNSW_CanFamBas_1.01843,416,770 - 43,433,264 (+)NCBI
UU_Cfam_GSD_1.01844,148,886 - 44,165,391 (+)NCBI
Chst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,206,205 - 21,212,818 (+)NCBI
SpeTri2.0NW_0049365623,318,821 - 3,324,460 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl216,772,208 - 16,789,031 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1216,772,210 - 16,789,031 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2218,178,340 - 18,195,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,678,972 - 19,696,466 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl119,694,243 - 19,695,478 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038116,949,320 - 116,966,120 (+)NCBIVero_WHO_p1.0
Chst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247672,798,715 - 2,803,082 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247672,788,208 - 2,803,093 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH133864  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,574,311 - 78,574,522 (+)MAPPERmRatBN7.2
Rnor_6.0381,512,401 - 81,512,611NCBIRnor6.0
Rnor_5.0388,215,952 - 88,216,162UniSTSRnor5.0
RGSC_v3.4377,008,468 - 77,008,678UniSTSRGSC3.4
Celera377,775,498 - 77,775,708UniSTS
RH 3.4 Map3685.09UniSTS
Cytogenetic Map3q24UniSTS
UniSTS:498370  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0388,215,790 - 88,216,215NCBIRnor5.0
RGSC_v3.4377,008,306 - 77,008,731UniSTSRGSC3.4
Celera377,775,336 - 77,775,761UniSTS
Cytogenetic Map3q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:186
Interacting mature miRNAs:225
Transcripts:ENSRNOT00000010510
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 11 64 18 4
Low 1 43 25 9 8 9 8 11 10 35 23 7 8
Below cutoff 32 32 32

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001011955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ625652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ626604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ727497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ746743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ760246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000010510   ⟹   ENSRNOP00000010510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,559,303 - 78,574,883 (+)Ensembl
Rnor_6.0 Ensembl381,498,022 - 81,512,807 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095049   ⟹   ENSRNOP00000090213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,558,293 - 78,574,883 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095051   ⟹   ENSRNOP00000081989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,560,017 - 78,574,883 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098205   ⟹   ENSRNOP00000087464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,565,665 - 78,574,737 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113200   ⟹   ENSRNOP00000079857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,548,525 - 78,574,883 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114058   ⟹   ENSRNOP00000086161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,558,888 - 78,574,740 (+)Ensembl
RefSeq Acc Id: NM_001011955   ⟹   NP_001011955
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2378,559,932 - 78,574,718 (+)NCBI
Rnor_6.0381,498,022 - 81,512,807 (+)NCBI
Rnor_5.0388,201,573 - 88,216,380 (+)NCBI
RGSC_v3.4376,994,089 - 77,008,874 (+)RGD
Celera377,761,117 - 77,775,904 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591560   ⟹   XP_017447049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2378,552,059 - 78,574,736 (+)NCBI
Rnor_6.0381,451,620 - 81,512,829 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591562   ⟹   XP_017447051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2378,558,085 - 78,574,736 (+)NCBI
Rnor_6.0381,451,620 - 81,512,829 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591563   ⟹   XP_017447052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2378,558,479 - 78,574,736 (+)NCBI
Rnor_6.0381,451,620 - 81,512,829 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001011955   ⟸   NM_001011955
- Peptide Label: precursor
- UniProtKB: Q5RJQ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447052   ⟸   XM_017591563
- Peptide Label: isoform X1
- UniProtKB: Q5RJQ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447051   ⟸   XM_017591562
- Peptide Label: isoform X1
- UniProtKB: Q5RJQ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447049   ⟸   XM_017591560
- Peptide Label: isoform X1
- UniProtKB: Q5RJQ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010510   ⟸   ENSRNOT00000010510
RefSeq Acc Id: ENSRNOP00000090213   ⟸   ENSRNOT00000095049
RefSeq Acc Id: ENSRNOP00000087464   ⟸   ENSRNOT00000098205
RefSeq Acc Id: ENSRNOP00000079857   ⟸   ENSRNOT00000113200
RefSeq Acc Id: ENSRNOP00000086161   ⟸   ENSRNOT00000114058
RefSeq Acc Id: ENSRNOP00000081989   ⟸   ENSRNOT00000095051

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RJQ0-F1-model_v2 AlphaFold Q5RJQ0 1-411 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692227
Promoter ID:EPDNEW_R2752
Type:single initiation site
Name:Chst1_1
Description:carbohydrate sulfotransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0381,498,114 - 81,498,174EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308142 AgrOrtholog
BioCyc Gene G2FUF-48687 BioCyc
Ensembl Genes ENSRNOG00000007989 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000010510 UniProtKB/Swiss-Prot
  ENSRNOP00000079857 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000081989 UniProtKB/Swiss-Prot
  ENSRNOP00000086161 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000087464 UniProtKB/Swiss-Prot
  ENSRNOP00000090213 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010510 UniProtKB/Swiss-Prot
  ENSRNOT00000095049 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000095051 UniProtKB/Swiss-Prot
  ENSRNOT00000098205 UniProtKB/Swiss-Prot
  ENSRNOT00000113200 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000114058 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7302418 IMAGE-MGC_LOAD
InterPro Carbohydrate_sulfotransferase UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Sulfotransferase_dom UniProtKB/Swiss-Prot
KEGG Report rno:295934 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105963 IMAGE-MGC_LOAD
NCBI Gene 295934 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/Swiss-Prot
PhenoGen Chst1 PhenoGen
PIRSF Carbohydrate_sulfotransferase UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt CHST1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Chst1  carbohydrate sulfotransferase 1  Chst1  carbohydrate (keratan sulfate Gal-6) sulfotransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Chst1  carbohydrate (keratan sulfate Gal-6) sulfotransferase 1  Chst1_predicted  carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Chst1_predicted  carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED