TESPA1 (thymocyte expressed, positive selection associated 1) - Rat Genome Database

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Gene: TESPA1 (thymocyte expressed, positive selection associated 1) Sus scrofa
Analyze
Symbol: TESPA1
Name: thymocyte expressed, positive selection associated 1
RGD ID: 14171760
Description: ENCODES a protein that exhibits phospholipase binding (ortholog); INVOLVED IN COP9 signalosome assembly (ortholog); positive regulation of T cell differentiation in thymus (ortholog); positive regulation of T cell receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); TCR signalosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,904,237 - 20,017,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,966,623 - 20,017,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,833,623 - 20,879,675 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
TESPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,904,237 - 20,017,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,966,623 - 20,017,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,833,623 - 20,879,675 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TESPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,948,015 - 54,985,188 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,948,015 - 54,984,762 (-)EnsemblGRCh38hg38GRCh38
GRCh371255,341,799 - 55,378,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361253,630,196 - 53,661,889 (-)NCBINCBI36Build 36hg18NCBI36
Celera1254,995,725 - 55,030,320 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1252,380,944 - 52,417,339 (-)NCBIHuRef
CHM1_11255,308,992 - 55,345,430 (-)NCBICHM1_1
T2T-CHM13v2.01254,914,643 - 54,951,806 (-)NCBIT2T-CHM13v2.0
Tespa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910130,158,696 - 130,199,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10130,158,739 - 130,199,980 (+)EnsemblGRCm39 Ensembl
GRCm3810130,322,826 - 130,363,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10130,322,870 - 130,364,111 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710129,759,908 - 129,799,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610129,750,238 - 129,765,586 (+)NCBIMGSCv36mm8
Celera10132,697,226 - 132,737,126 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.85NCBI
Tespa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554582,084,868 - 2,108,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554582,084,931 - 2,108,328 (-)NCBIChiLan1.0ChiLan1.0
TESPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,192,237 - 39,226,747 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,189,006 - 39,223,516 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01233,765,283 - 33,800,883 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11234,503,099 - 34,527,627 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1234,492,311 - 34,527,627 (+)Ensemblpanpan1.1panPan2
TESPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127424,836 - 460,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl27424,715 - 460,097 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,785,344 - 45,820,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.027430,147 - 465,443 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl27430,145 - 465,443 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127424,573 - 459,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027433,043 - 468,280 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02746,190,588 - 46,225,895 (-)NCBIUU_Cfam_GSD_1.0
Tespa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494560,858,971 - 60,887,735 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936891512,671 - 534,025 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936891512,882 - 549,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TESPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,044,269 - 51,079,210 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,042,095 - 51,070,939 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037194,955,965 - 194,991,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tespa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462498331,766 - 45,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462498331,552 - 47,575 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TESPA1
1387 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 10 3 2 5 14 12 10 3 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000042104   ⟹   ENSSSCP00000045091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl519,904,237 - 20,017,433 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000051377   ⟹   ENSSSCP00000041518
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl519,905,207 - 20,017,419 (-)Ensembl
RefSeq Acc Id: XM_013997591   ⟹   XP_013853045
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1519,966,623 - 20,017,476 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013853045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000045091
  ENSSSCP00000045091.3
  ENSSSCP00015003404.1
  ENSSSCP00035002869.1
  ENSSSCP00045001902.1
  ENSSSCP00050032526.1
  ENSSSCP00055026870.1
  ENSSSCP00065022154.1
RefSeq Acc Id: XP_013853045   ⟸   XM_013997591
- UniProtKB: A0A8D1CKM2 (UniProtKB/TrEMBL),   A0A8D1N4Z1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000041518   ⟸   ENSSSCT00000051377
Ensembl Acc Id: ENSSSCP00000045091   ⟸   ENSSSCT00000042104
Protein Domains
ITPR-interacting


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000299 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015006277 UniProtKB/TrEMBL
  ENSSSCG00035006800 UniProtKB/TrEMBL
  ENSSSCG00045001893 UniProtKB/TrEMBL
  ENSSSCG00050055213 UniProtKB/TrEMBL
  ENSSSCG00055017065 UniProtKB/TrEMBL
  ENSSSCG00065037413 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042104 ENTREZGENE
  ENSSSCT00000042104.3 UniProtKB/TrEMBL
  ENSSSCT00015008441.1 UniProtKB/TrEMBL
  ENSSSCT00035008486.1 UniProtKB/TrEMBL
  ENSSSCT00045003017.1 UniProtKB/TrEMBL
  ENSSSCT00050075376.1 UniProtKB/TrEMBL
  ENSSSCT00055033813.1 UniProtKB/TrEMBL
  ENSSSCT00065051080.1 UniProtKB/TrEMBL
InterPro ITPR-bd UniProtKB/TrEMBL
  TESPA1-like UniProtKB/TrEMBL
KEGG Report ssc:100153079 UniProtKB/TrEMBL
NCBI Gene TESPA1 ENTREZGENE
PANTHER PTHR17469 UniProtKB/TrEMBL
  PTHR17469:SF1 UniProtKB/TrEMBL
Pfam KRAP_IP3R_bind UniProtKB/TrEMBL
SMART KRAP_IP3R_bind UniProtKB/TrEMBL
UniProt A0A287AM55_PIG UniProtKB/TrEMBL
  A0A8D1CKM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GCV9_PIG UniProtKB/TrEMBL
  A0A8D1N4Z1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93887 ENTREZGENE